RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 PMCHP20382 165 aa15.41■□□□□ 0.06
USP39-204ENST00000409766 RIGQ13278 110 aa15.41■□□□□ 0.06
USP39-204ENST00000409766 DEFB113Q30KQ7 82 aa15.41■□□□□ 0.06
USP39-204ENST00000409766 LCNL1Q6ZST4 164 aa15.41■□□□□ 0.06
USP39-204ENST00000409766 GATD1Q8NB37 220 aa15.41■□□□□ 0.06
USP39-204ENST00000409766 OR4X2Q8NGF9 303 aa15.41■□□□□ 0.06
USP39-204ENST00000409766 MRPL53Q96EL3 112 aaKnown RBP15.41■□□□□ 0.06
USP39-204ENST00000409766 A0A0G2JLM5 398 aa15.4■□□□□ 0.06
USP39-204ENST00000409766 IGHV4-31P0DP07 118 aa15.4■□□□□ 0.06
USP39-204ENST00000409766 BMI1P35226 326 aa15.4■□□□□ 0.06
USP39-204ENST00000409766 NRN1Q9NPD7 142 aa15.4■□□□□ 0.06
USP39-204ENST00000409766 RNF114Q9Y508 228 aa15.4■□□□□ 0.06
USP39-204ENST00000409766 A0A1B0GW15 77 aa15.39■□□□□ 0.05
USP39-204ENST00000409766 FSHBP01225 129 aa15.39■□□□□ 0.05
USP39-204ENST00000409766 NDFIP1Q9BT67 221 aa15.39■□□□□ 0.05
USP39-204ENST00000409766 TENM4Q6N022 2769 aa15.39■□□□□ 0.05
USP39-204ENST00000409766 SMAD7O15105 426 aaKnown RBP15.39■□□□□ 0.05
USP39-204ENST00000409766 LRRC75A-AS1Q8N1F1 130 aa15.39■□□□□ 0.05
USP39-204ENST00000409766 FAM19A2Q8N3H0 131 aa15.39■□□□□ 0.05
USP39-204ENST00000409766 TMSB15BA0A087X1C1 80 aa15.38■□□□□ 0.05
USP39-204ENST00000409766 PLA2G2AP14555 144 aa15.38■□□□□ 0.05
USP39-204ENST00000409766 TMEM95Q3KNT9 176 aa15.38■□□□□ 0.05
USP39-204ENST00000409766 NIT1Q86X76 327 aa15.38■□□□□ 0.05
USP39-204ENST00000409766 TPPP3Q9BW30 176 aa15.38■□□□□ 0.05
USP39-204ENST00000409766 NAV2Q8IVL1 2488 aa15.38■□□□□ 0.05
USP39-204ENST00000409766 DDTP30046 118 aa15.38■□□□□ 0.05
USP39-204ENST00000409766 Q5PR19 223 aa15.38■□□□□ 0.05
USP39-204ENST00000409766 LYZL1Q6UWQ5 148 aa15.38■□□□□ 0.05
USP39-204ENST00000409766 ZNF575Q86XF7 245 aa15.38■□□□□ 0.05
USP39-204ENST00000409766 SRSF2Q01130 221 aaKnown RBP15.37■□□□□ 0.05
USP39-204ENST00000409766 FAM209BQ5JX69 171 aa15.37■□□□□ 0.05
USP39-204ENST00000409766 URB1-AS1Q96HZ7 61 aa15.37■□□□□ 0.05
USP39-204ENST00000409766 AGPAT4-IT1Q9H0P7 198 aa15.37■□□□□ 0.05
USP39-204ENST00000409766 BORCS7Q96B45 105 aa15.36■□□□□ 0.05
USP39-204ENST00000409766 NPFFR1Q9GZQ6 430 aa15.36■□□□□ 0.05
USP39-204ENST00000409766 CLEC5AQ9NY25 188 aa15.36■□□□□ 0.05
USP39-204ENST00000409766 FABP5P3A8MUU1 101 aa15.36■□□□□ 0.05
USP39-204ENST00000409766 HSBP1O75506 76 aa15.36■□□□□ 0.05
USP39-204ENST00000409766 ZNF705DP0CH99 300 aaPredicted RBP15.36■□□□□ 0.05
USP39-204ENST00000409766 ZNF705BP0CI00 300 aaPredicted RBP15.36■□□□□ 0.05
USP39-204ENST00000409766 PSMB8P28062 276 aa15.36■□□□□ 0.05
USP39-204ENST00000409766 RPS20P60866 119 aaKnown RBP15.36■□□□□ 0.05
USP39-204ENST00000409766 C9orf139Q6ZV77 190 aa15.36■□□□□ 0.05
USP39-204ENST00000409766 IL17RELQ6ZVW7 336 aa15.36■□□□□ 0.05
USP39-204ENST00000409766 MXRA5Q9NR99 2828 aa15.35■□□□□ 0.05
USP39-204ENST00000409766 APCP25054 2843 aa15.35■□□□□ 0.05
USP39-204ENST00000409766 NTF3P20783 257 aa15.35■□□□□ 0.05
USP39-204ENST00000409766 RNASEKQ6P5S7 137 aaKnown RBP15.35■□□□□ 0.05
USP39-204ENST00000409766 ZNF493Q6ZR52 646 aa15.35■□□□□ 0.05
USP39-204ENST00000409766 GPHB5Q86YW7 130 aa15.35■□□□□ 0.05
USP39-204ENST00000409766 C16orf92Q96LL3 132 aa15.35■□□□□ 0.05
USP39-204ENST00000409766 PSMG3-AS1Q96PY0 264 aa15.35■□□□□ 0.05
USP39-204ENST00000409766 KRTDAPP60985 99 aa15.34■□□□□ 0.05
USP39-204ENST00000409766 C9orf47Q6ZRZ4 202 aa15.34■□□□□ 0.05
USP39-204ENST00000409766 PRRC2AP48634 2157 aaKnown RBP15.34■□□□□ 0.05
USP39-204ENST00000409766 J3QKU1 62 aa15.34■□□□□ 0.05
USP39-204ENST00000409766 ZNF138P52744 262 aa15.34■□□□□ 0.05
USP39-204ENST00000409766 TEX43Q6ZNM6 134 aa15.34■□□□□ 0.05
USP39-204ENST00000409766 Q8N976 141 aa15.34■□□□□ 0.05
USP39-204ENST00000409766 IGLC6P0CF74 106 aa15.33■□□□□ 0.04
USP39-204ENST00000409766 CTRLP40313 264 aa15.33■□□□□ 0.04
USP39-204ENST00000409766 TMEM78Q5T7P6 136 aa15.33■□□□□ 0.04
USP39-204ENST00000409766 Q6YL49 198 aa15.33■□□□□ 0.04
USP39-204ENST00000409766 VPREB3Q9UKI3 123 aa15.33■□□□□ 0.04
USP39-204ENST00000409766 DEFA6Q01524 100 aa15.33■□□□□ 0.04
USP39-204ENST00000409766 C20orf173Q96LM9 149 aa15.33■□□□□ 0.04
USP39-204ENST00000409766 PPP1R14DQ9NXH3 145 aa15.33■□□□□ 0.04
USP39-204ENST00000409766 PEF1Q9UBV8 284 aaKnown RBP15.33■□□□□ 0.04
USP39-204ENST00000409766 M0QZ24 198 aa15.32■□□□□ 0.04
USP39-204ENST00000409766 SOCS3O14543 225 aa15.32■□□□□ 0.04
USP39-204ENST00000409766 ORM1P02763 201 aa15.32■□□□□ 0.04
USP39-204ENST00000409766 FER1L6-AS1Q8NA97 138 aa15.32■□□□□ 0.04
USP39-204ENST00000409766 TEX15Q9BXT5 2789 aa15.32■□□□□ 0.04
USP39-204ENST00000409766 TMEM213A2RRL7 107 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 M0R2Z0 102 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 C3orf79P0CE67 100 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 LINC01559Q495D7 138 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 CHCHD1Q96BP2 118 aaKnown RBP15.31■□□□□ 0.04
USP39-204ENST00000409766 Q96MF0 132 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 KIR2DL5BA0A0G2JN68 375 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 KIR2DL5BA0A0G2JPC4 375 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 IGHV7-4-1A0A0J9YVY3 117 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 TMEM89A2RUT3 159 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 TDRG1Q3Y452 100 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 TM4SF20Q53R12 229 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 C10orf99Q6UWK7 81 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 KRTAP1-3Q8IUG1 177 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 KIR2DL5AQ8N109 375 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 C14orf144Q96I85 54 aa15.31■□□□□ 0.04
USP39-204ENST00000409766 DAZ1Q9NQZ3 744 aaKnown RBP15.31■□□□□ 0.04
USP39-204ENST00000409766 CREBBPQ92793 2442 aa15.3■□□□□ 0.04
USP39-204ENST00000409766 LINC00614P0C842 121 aa15.29■□□□□ 0.04
USP39-204ENST00000409766 HIST1H1AQ02539 215 aaPredicted RBP15.29■□□□□ 0.04
USP39-204ENST00000409766 RHPN1-AS1Q9BWJ2 59 aa15.29■□□□□ 0.04
USP39-204ENST00000409766 MUC21A0A0G2JKD1 596 aa15.29■□□□□ 0.04
USP39-204ENST00000409766 MUC21A0A140T8X8 626 aa15.29■□□□□ 0.04
USP39-204ENST00000409766 FAM181BA6NEQ2 426 aa15.29■□□□□ 0.04
USP39-204ENST00000409766 SSTP61278 116 aa15.29■□□□□ 0.04
USP39-204ENST00000409766 MUC21Q5SSG8 566 aa15.29■□□□□ 0.04
USP39-204ENST00000409766 PRSS57Q6UWY2 283 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms