RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 FABP5P3A8MUU1 101 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 PVRIGQ6DKI7 326 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 SCRT1Q9BWW7 348 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 SIGLEC9Q9Y336 463 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 A0A0U1RQV1 116 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 F2Z2F3 143 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 CD7P09564 240 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 CHCHD5Q9BSY4 110 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 USF3Q68DE3 2245 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 TRBV5-5A0A0J9YX44 114 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 A0A1B0GW64 132 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 IGLL5B9A064 214 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 SRSF2Q01130 221 aaKnown RBP5.87□□□□□ -1.47
SCN9A-202ENST00000409435 C1orf195Q5TG92 126 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 SLC25A38Q96DW6 304 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 AKAP6Q13023 2319 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 CENPVL3A0A0U1RRI6 287 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 F8W735 103 aaPredicted RBP5.86□□□□□ -1.47
SCN9A-202ENST00000409435 VPREB1P12018 145 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 CFHR4Q92496 578 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 IGHV1-24A0A0C4DH33 117 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 FAM90A9PA6NNJ1 464 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 C1orf100Q5SVJ3 147 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 ZC2HC1BQ5TFG8 222 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 TMEM256Q8N2U0 113 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 OR11H6Q8NGC7 330 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 F8VVB4 439 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 F8VWA3 439 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 IGLV3-9A0A075B6K5 115 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 NPIPB5A8MRT5 1133 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 CD200R1LQ6Q8B3 271 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 PSMG3-AS1Q96PY0 264 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 Q9H3A6 140 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 MMP23AO75900 390 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 IGLL1P15814 213 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 LINC00114Q6XXX2 140 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 CARD19Q96LW7 228 aa5.86□□□□□ -1.47
SCN9A-202ENST00000409435 KIF26AQ9ULI4 1882 aaPredicted RBP5.85□□□□□ -1.47
SCN9A-202ENST00000409435 F6UB75 175 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 NANOS3P60323 173 aaKnown RBP5.85□□□□□ -1.47
SCN9A-202ENST00000409435 ZNF497Q6ZNH5 498 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 PRR25Q96S07 402 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 XCL2Q9UBD3 114 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 MYLKQ15746 1914 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 A0A1B0GX51 115 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 ADARB2-AS1A8MUL3 147 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 IGLC2P0DOY2 106 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 IGLC3P0DOY3 106 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 TAL2Q16559 108 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 ZGRF1Q86YA3 2104 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 DSCR8Q96T75 97 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 IFI27L2Q9H2X8 130 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 TFF3Q07654 80 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 C8orf82Q6P1X6 216 aaPredicted RBP5.85□□□□□ -1.47
SCN9A-202ENST00000409435 OCC1Q8TAD7 63 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 IGKV1D-17A0A075B6S4 117 aa5.85□□□□□ -1.47
SCN9A-202ENST00000409435 DEFB136Q30KP8 78 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 SIGLEC8Q9NYZ4 499 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 TRAV12-1A0A0B4J245 112 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 D6R8Y8 96 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 H3BUA1 57 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 TEX43Q6ZNM6 134 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 MUSTN1Q8IVN3 82 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 IGHV3-53P01767 116 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 FGF6P10767 208 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 MORN5Q5VZ52 161 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 TEX36Q5VZQ5 186 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 FER1L5A0AVI2 2057 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 LYPD3O95274 346 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 ATP5G1P05496 136 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 KRTAP10-9P60411 292 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 MIR17HGQ75NE6 70 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 TIMM21Q9BVV7 248 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 CCDC88CQ9P219 2028 aa5.84□□□□□ -1.47
SCN9A-202ENST00000409435 FAM236AA0A1B0GUQ0 79 aa5.84□□□□□ -1.48
SCN9A-202ENST00000409435 FAM236BA0A1B0GV22 79 aa5.84□□□□□ -1.48
SCN9A-202ENST00000409435 SPART-AS1P0CW21 52 aa5.84□□□□□ -1.48
SCN9A-202ENST00000409435 CXCL5P42830 114 aa5.84□□□□□ -1.48
SCN9A-202ENST00000409435 NTN5Q8WTR8 489 aaPredicted RBP5.84□□□□□ -1.48
SCN9A-202ENST00000409435 RNF125Q96EQ8 232 aa5.84□□□□□ -1.48
SCN9A-202ENST00000409435 LSM4Q9Y4Z0 139 aaKnown RBP5.84□□□□□ -1.48
SCN9A-202ENST00000409435 FANCMQ8IYD8 2048 aa5.84□□□□□ -1.48
SCN9A-202ENST00000409435 H3BMG7 143 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 LOXP28300 417 aaPredicted RBP5.83□□□□□ -1.48
SCN9A-202ENST00000409435 MP68P56378 58 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 BVES-AS1Q5T3Y7 98 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 PSMB8P28062 276 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 NDPQ00604 133 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 NCOR2Q9Y618 2525 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 NOTCH4Q99466 2003 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 C22orf46C9J442 243 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 HLA-DMBP28068 263 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 KAAG1Q9UBP8 84 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 POLEQ07864 2286 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 TRBV5-7A0A0A0MS05 114 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 Q0VG73 95 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 LINC01590Q5TEZ4 76 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 G3V318 75 aa5.83□□□□□ -1.48
SCN9A-202ENST00000409435 IGFBP3P17936 291 aaPredicted RBP5.82□□□□□ -1.48
SCN9A-202ENST00000409435 Q6YL49 198 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms