RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SRSF1Q07955 248 aaKnown RBP eCLIP14.6□□□□□ -0.073e-8■■■□□ 14.8
USP48-204ENST00000400301 FAM120AOSQ5T036 256 aa14.6□□□□□ -0.07
USP48-204ENST00000400301 KLF5Q13887 457 aaPredicted RBP14.6□□□□□ -0.07
USP48-204ENST00000400301 TTC9CQ8N5M4 171 aa14.6□□□□□ -0.07
USP48-204ENST00000400301 KLF12Q9Y4X4 402 aa14.6□□□□□ -0.07
USP48-204ENST00000400301 DSCAMO60469 2012 aa14.6□□□□□ -0.07
USP48-204ENST00000400301 H3BUT2 72 aa14.6□□□□□ -0.07
USP48-204ENST00000400301 PPP1R17O96001 155 aa14.6□□□□□ -0.07
USP48-204ENST00000400301 PAX1P15863 534 aa14.6□□□□□ -0.07
USP48-204ENST00000400301 CD7P09564 240 aa14.59□□□□□ -0.07
USP48-204ENST00000400301 GTSF1Q8WW33 167 aa14.59□□□□□ -0.07
USP48-204ENST00000400301 MRPL51Q4U2R6 128 aaKnown RBP14.59□□□□□ -0.07
USP48-204ENST00000400301 LYRM7Q5U5X0 104 aa14.59□□□□□ -0.07
USP48-204ENST00000400301 IL17RELQ6ZVW7 336 aa14.59□□□□□ -0.07
USP48-204ENST00000400301 C1orf122Q6ZSJ8 110 aa14.58□□□□□ -0.07
USP48-204ENST00000400301 ORAOV1Q8WV07 137 aa14.58□□□□□ -0.07
USP48-204ENST00000400301 OR4X2Q8NGF9 303 aa14.58□□□□□ -0.08
USP48-204ENST00000400301 C1orf159Q96HA4 380 aa14.58□□□□□ -0.08
USP48-204ENST00000400301 STPG4Q8N801 248 aa14.58□□□□□ -0.08
USP48-204ENST00000400301 IGKCP01834 107 aa14.57□□□□□ -0.08
USP48-204ENST00000400301 TMEM238LA0A1B0GVL6 79 aa14.57□□□□□ -0.08
USP48-204ENST00000400301 A6NJY4 79 aa14.57□□□□□ -0.08
USP48-204ENST00000400301 ESDP10768 282 aa14.57□□□□□ -0.08
USP48-204ENST00000400301 PSMB2P49721 201 aa14.57□□□□□ -0.08
USP48-204ENST00000400301 TMEM158Q8WZ71 300 aa14.57□□□□□ -0.08
USP48-204ENST00000400301 IGLV11-55A0A075B6I3 123 aa14.57□□□□□ -0.08
USP48-204ENST00000400301 HOXB4P17483 251 aaPredicted RBP14.57□□□□□ -0.08
USP48-204ENST00000400301 ADORA2A-AS1P86434 159 aa14.57□□□□□ -0.08
USP48-204ENST00000400301 NPBQ8NG41 125 aa14.57□□□□□ -0.08
USP48-204ENST00000400301 DUX5Q96PT3 197 aa14.57□□□□□ -0.08
USP48-204ENST00000400301 JKAMPQ9P055 326 aa14.57□□□□□ -0.08
USP48-204ENST00000400301 LOC107984156A0A0G2JMH3 177 aa14.56□□□□□ -0.08
USP48-204ENST00000400301 TNFRSF6BO95407 300 aa14.56□□□□□ -0.08
USP48-204ENST00000400301 AMMECR1LQ6DCA0 310 aa14.56□□□□□ -0.08
USP48-204ENST00000400301 PRSS57Q6UWY2 283 aa14.56□□□□□ -0.08
USP48-204ENST00000400301 ARL17AQ8IVW1 177 aa14.56□□□□□ -0.08
USP48-204ENST00000400301 SEC11AP67812 179 aa14.56□□□□□ -0.08
USP48-204ENST00000400301 COTL1Q14019 142 aa14.56□□□□□ -0.08
USP48-204ENST00000400301 LAGE3Q14657 143 aa14.56□□□□□ -0.08
USP48-204ENST00000400301 TMEM170BQ5T4T1 132 aa14.56□□□□□ -0.08
USP48-204ENST00000400301 SIGLEC8Q9NYZ4 499 aa14.56□□□□□ -0.08
USP48-204ENST00000400301 FAM223BA6NKX1 122 aa14.55□□□□□ -0.08
USP48-204ENST00000400301 GTSCR1Q86UQ5 136 aa14.55□□□□□ -0.08
USP48-204ENST00000400301 FAM223AQ8IWN6 122 aa14.55□□□□□ -0.08
USP48-204ENST00000400301 LINC00477Q96M19 166 aa14.55□□□□□ -0.08
USP48-204ENST00000400301 ZNF256Q9Y2P7 627 aaPredicted RBP14.55□□□□□ -0.08
USP48-204ENST00000400301 IGHV7-81A0A0B4J1V7 117 aa14.55□□□□□ -0.08
USP48-204ENST00000400301 PCP4P48539 62 aa14.55□□□□□ -0.08
USP48-204ENST00000400301 NPSP0C0P6 89 aa14.55□□□□□ -0.08
USP48-204ENST00000400301 ORMDL2Q53FV1 153 aa14.55□□□□□ -0.08
USP48-204ENST00000400301 NAA38Q9BRA0 125 aaKnown RBP14.55□□□□□ -0.08
USP48-204ENST00000400301 HSD52Q0P140 79 aa14.55□□□□□ -0.08
USP48-204ENST00000400301 C8orf86Q6ZUL3 223 aa14.55□□□□□ -0.08
USP48-204ENST00000400301 OR9G4Q8NGQ1 327 aa14.55□□□□□ -0.08
USP48-204ENST00000400301 RHPN1-AS1Q9BWJ2 59 aa14.55□□□□□ -0.08
USP48-204ENST00000400301 SPCS1Q9Y6A9 102 aa14.55□□□□□ -0.08
USP48-204ENST00000400301 SP5Q6BEB4 398 aaPredicted RBP14.54□□□□□ -0.08
USP48-204ENST00000400301 ARHGAP32A7KAX9 2087 aa14.54□□□□□ -0.08
USP48-204ENST00000400301 IGHV3OR16-12A0A075B7B8 117 aa14.54□□□□□ -0.08
USP48-204ENST00000400301 IGHV1-69DA0A0B4J2H0 117 aa14.54□□□□□ -0.08
USP48-204ENST00000400301 IGHV1-69P01742 117 aa14.54□□□□□ -0.08
USP48-204ENST00000400301 EGR2P11161 476 aaPredicted RBP14.54□□□□□ -0.08
USP48-204ENST00000400301 LINC00173Q6ZV60 143 aa14.54□□□□□ -0.08
USP48-204ENST00000400301 USMG5Q96IX5 58 aa14.54□□□□□ -0.08
USP48-204ENST00000400301 NHP2Q9NX24 153 aaKnown RBP14.54□□□□□ -0.08
USP48-204ENST00000400301 C14orf178Q8N769 122 aaPredicted RBP14.54□□□□□ -0.08
USP48-204ENST00000400301 OR2K2Q8NGT1 345 aa14.54□□□□□ -0.08
USP48-204ENST00000400301 B4DSR2 109 aa14.53□□□□□ -0.08
USP48-204ENST00000400301 OVOL3O00110 214 aa14.53□□□□□ -0.08
USP48-204ENST00000400301 NPYP01303 97 aa14.53□□□□□ -0.08
USP48-204ENST00000400301 COX11Q9Y6N1 276 aa14.53□□□□□ -0.08
USP48-204ENST00000400301 SAMD13Q5VXD3 122 aa14.53□□□□□ -0.08
USP48-204ENST00000400301 LINC00322Q6ZN03 302 aaPredicted RBP14.53□□□□□ -0.08
USP48-204ENST00000400301 CTSGP08311 255 aa14.53□□□□□ -0.08
USP48-204ENST00000400301 ZNF688P0C7X2 276 aa14.53□□□□□ -0.08
USP48-204ENST00000400301 UBE2V1Q13404 147 aa14.52□□□□□ -0.08
USP48-204ENST00000400301 DYNAPQ8N1N2 210 aa14.52□□□□□ -0.08
USP48-204ENST00000400301 FBXL19-AS1Q494R0 122 aa14.52□□□□□ -0.09
USP48-204ENST00000400301 ZC2HC1BQ5TFG8 222 aa14.52□□□□□ -0.09
USP48-204ENST00000400301 FCN3O75636 299 aa14.52□□□□□ -0.09
USP48-204ENST00000400301 DEFB104AQ8WTQ1 72 aa14.52□□□□□ -0.09
USP48-204ENST00000400301 TP53TG3Q9ULZ0 132 aa14.52□□□□□ -0.09
USP48-204ENST00000400301 LGALS3P17931 250 aaKnown RBP14.51□□□□□ -0.09
USP48-204ENST00000400301 SMPXQ9UHP9 88 aa14.51□□□□□ -0.09
USP48-204ENST00000400301 LDLRAD2Q5SZI1 272 aa14.51□□□□□ -0.09
USP48-204ENST00000400301 NPIPB6E9PJ23 425 aa14.51□□□□□ -0.09
USP48-204ENST00000400301 RAX2Q96IS3 184 aa14.5□□□□□ -0.09
USP48-204ENST00000400301 PRSS22Q9GZN4 317 aa14.5□□□□□ -0.09
USP48-204ENST00000400301 C19orf71A6NCJ1 209 aa14.5□□□□□ -0.09
USP48-204ENST00000400301 FANCD2OSQ96PS1 177 aa14.5□□□□□ -0.09
USP48-204ENST00000400301 CYSLTR1Q9Y271 337 aa14.5□□□□□ -0.09
USP48-204ENST00000400301 ZFP36P26651 326 aaKnown RBP14.5□□□□□ -0.09
USP48-204ENST00000400301 LINC01559Q495D7 138 aa14.5□□□□□ -0.09
USP48-204ENST00000400301 GDF5OSQ5U4N7 250 aa14.5□□□□□ -0.09
USP48-204ENST00000400301 DPH3P1Q9H4G8 78 aa14.5□□□□□ -0.09
USP48-204ENST00000400301 Q8N9W7 124 aa14.5□□□□□ -0.09
USP48-204ENST00000400301 ZNF747Q9BV97 191 aa14.5□□□□□ -0.09
USP48-204ENST00000400301 H7C2G1 150 aa14.49□□□□□ -0.09
USP48-204ENST00000400301 CHTOPQ9Y3Y2 248 aaKnown RBP14.49□□□□□ -0.09
USP48-204ENST00000400301 AGPAT4-IT1Q9H0P7 198 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms