RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 CDC34P49427 236 aaPredicted RBP20.26■□□□□ 0.83
HMGB1-205ENST00000399494 BAP18Q8IXM2 172 aa20.26■□□□□ 0.83
HMGB1-205ENST00000399494 ZNF503Q96F45 646 aa20.26■□□□□ 0.83
HMGB1-205ENST00000399494 PHYHIPLQ96FC7 376 aa20.26■□□□□ 0.83
HMGB1-205ENST00000399494 PQLC2Q6ZP29 291 aa20.25■□□□□ 0.83
HMGB1-205ENST00000399494 FAM210BQ96KR6 192 aa20.25■□□□□ 0.83
HMGB1-205ENST00000399494 DKK2Q9UBU2 259 aa20.25■□□□□ 0.83
HMGB1-205ENST00000399494 TRAV12-2A0A075B6T6 113 aa20.24■□□□□ 0.83
HMGB1-205ENST00000399494 Q6ZR54 194 aa20.24■□□□□ 0.83
HMGB1-205ENST00000399494 C1orf158Q8N1D5 194 aa20.24■□□□□ 0.83
HMGB1-205ENST00000399494 PLA2G2EQ9NZK7 142 aa20.24■□□□□ 0.83
HMGB1-205ENST00000399494 DNAH11Q96DT5 4516 aa20.24■□□□□ 0.83
HMGB1-205ENST00000399494 HMGB3O15347 200 aaKnown RBP20.23■□□□□ 0.83
HMGB1-205ENST00000399494 CDKN1BP46527 198 aa20.23■□□□□ 0.83
HMGB1-205ENST00000399494 RANP62826 216 aaKnown RBP20.23■□□□□ 0.83
HMGB1-205ENST00000399494 ZNF345Q14585 488 aa20.23■□□□□ 0.83
HMGB1-205ENST00000399494 NPIPB6E9PJ23 425 aa20.22■□□□□ 0.83
HMGB1-205ENST00000399494 CRXO43186 299 aaPredicted RBP20.22■□□□□ 0.83
HMGB1-205ENST00000399494 HBE1P02100 147 aa20.22■□□□□ 0.83
HMGB1-205ENST00000399494 TSPOP30536 169 aa20.22■□□□□ 0.83
HMGB1-205ENST00000399494 Q6ZNX1 250 aa20.22■□□□□ 0.83
HMGB1-205ENST00000399494 ARPC5LQ9BPX5 153 aa20.22■□□□□ 0.83
HMGB1-205ENST00000399494 NIPSNAP3BQ9BS92 247 aa20.22■□□□□ 0.83
HMGB1-205ENST00000399494 HMSDA8MTL9 139 aa20.21■□□□□ 0.83
HMGB1-205ENST00000399494 FAM222AQ5U5X8 452 aa20.21■□□□□ 0.83
HMGB1-205ENST00000399494 LYPD1Q8N2G4 141 aa20.21■□□□□ 0.83
HMGB1-205ENST00000399494 KCNRGQ8N5I3 272 aa20.21■□□□□ 0.83
HMGB1-205ENST00000399494 OR11H4Q8NGC9 324 aa20.21■□□□□ 0.83
HMGB1-205ENST00000399494 Q9H3A6 140 aa20.21■□□□□ 0.83
HMGB1-205ENST00000399494 IGLV2-18A0A075B6J9 118 aa20.2■□□□□ 0.82
HMGB1-205ENST00000399494 CSN1S1P47710 185 aa20.2■□□□□ 0.82
HMGB1-205ENST00000399494 UBE2DNLQ8IWF7 75 aa20.2■□□□□ 0.82
HMGB1-205ENST00000399494 RAB24Q969Q5 203 aa20.2■□□□□ 0.82
HMGB1-205ENST00000399494 ACTR3CQ9C0K3 210 aaPredicted RBP20.2■□□□□ 0.82
HMGB1-205ENST00000399494 TEX48A0A1B0GUV7 120 aa20.19■□□□□ 0.82
HMGB1-205ENST00000399494 ARL14EPLP0DKL9 152 aa20.19■□□□□ 0.82
HMGB1-205ENST00000399494 LEPP41159 167 aa20.19■□□□□ 0.82
HMGB1-205ENST00000399494 RRN3P1Q2M238 152 aa20.19■□□□□ 0.82
HMGB1-205ENST00000399494 A0A0D9SG52 128 aa20.18■□□□□ 0.82
HMGB1-205ENST00000399494 CT45A10P0DMU9 189 aa20.18■□□□□ 0.82
HMGB1-205ENST00000399494 ERCC8Q13216 396 aa20.18■□□□□ 0.82
HMGB1-205ENST00000399494 RNF212Q495C1 297 aa20.18■□□□□ 0.82
HMGB1-205ENST00000399494 ODF3Q96PU9 254 aa20.18■□□□□ 0.82
HMGB1-205ENST00000399494 CYTL1Q9NRR1 136 aa20.18■□□□□ 0.82
HMGB1-205ENST00000399494 IGKV2-40A0A087WW87 121 aaPredicted RBP20.17■□□□□ 0.82
HMGB1-205ENST00000399494 J3KRW8 73 aa20.17■□□□□ 0.82
HMGB1-205ENST00000399494 IGKV2D-40P01614 121 aaPredicted RBP20.17■□□□□ 0.82
HMGB1-205ENST00000399494 STAG3L2P0CL84 134 aa20.17■□□□□ 0.82
HMGB1-205ENST00000399494 STAG3L3P0CL85 134 aa20.17■□□□□ 0.82
HMGB1-205ENST00000399494 FAM74A1Q5RGS3 127 aa20.17■□□□□ 0.82
HMGB1-205ENST00000399494 AKR1C8PQ5T2L2 129 aa20.17■□□□□ 0.82
HMGB1-205ENST00000399494 TMEM256Q8N2U0 113 aa20.17■□□□□ 0.82
HMGB1-205ENST00000399494 LINC00477Q96M19 166 aa20.17■□□□□ 0.82
HMGB1-205ENST00000399494 LINC01587Q99440 93 aa20.17■□□□□ 0.82
HMGB1-205ENST00000399494 LOC102723971A0A1B0GUV8 181 aa20.16■□□□□ 0.82
HMGB1-205ENST00000399494 KANTRA0A1W2PQU2 76 aa20.16■□□□□ 0.82
HMGB1-205ENST00000399494 TMEM78Q5T7P6 136 aa20.16■□□□□ 0.82
HMGB1-205ENST00000399494 ST6GAL2Q96JF0 529 aa20.16■□□□□ 0.82
HMGB1-205ENST00000399494 MUC4Q99102 2169 aa20.16■□□□□ 0.82
HMGB1-205ENST00000399494 hCG_2014768A0A024R1R8 64 aa20.15■□□□□ 0.82
HMGB1-205ENST00000399494 HYLS1Q96M11 299 aa20.15■□□□□ 0.82
HMGB1-205ENST00000399494 OTORQ9NRC9 128 aa20.15■□□□□ 0.82
HMGB1-205ENST00000399494 YTHDF2Q9Y5A9 579 aaKnown RBP20.15■□□□□ 0.82
HMGB1-205ENST00000399494 CXorf1O96002 111 aa20.14■□□□□ 0.81
HMGB1-205ENST00000399494 HTN3P15516 51 aa20.14■□□□□ 0.81
HMGB1-205ENST00000399494 C9orf47Q6ZRZ4 202 aa20.14■□□□□ 0.81
HMGB1-205ENST00000399494 CMTM2Q8TAZ6 248 aa20.14■□□□□ 0.81
HMGB1-205ENST00000399494 RXFP4Q8TDU9 374 aa20.14■□□□□ 0.81
HMGB1-205ENST00000399494 AGPAT4-IT1Q9H0P7 198 aa20.14■□□□□ 0.81
HMGB1-205ENST00000399494 ZNF705GA8MUZ8 300 aaPredicted RBP20.13■□□□□ 0.81
HMGB1-205ENST00000399494 BCL2L11O43521 198 aa20.13■□□□□ 0.81
HMGB1-205ENST00000399494 PFDN1O60925 122 aa20.13■□□□□ 0.81
HMGB1-205ENST00000399494 GCHFRP30047 84 aa20.13■□□□□ 0.81
HMGB1-205ENST00000399494 KIR3DS1Q14943 382 aa20.13■□□□□ 0.81
HMGB1-205ENST00000399494 GFI1BQ5VTD9 330 aa20.13■□□□□ 0.81
HMGB1-205ENST00000399494 IQCF2Q8IXL9 164 aa20.13■□□□□ 0.81
HMGB1-205ENST00000399494 C20orf144Q9BQM9 153 aa20.13■□□□□ 0.81
HMGB1-205ENST00000399494 ZNF471Q9BX82 626 aaPredicted RBP20.13■□□□□ 0.81
HMGB1-205ENST00000399494 RPH3ALQ9UNE2 315 aa20.13■□□□□ 0.81
HMGB1-205ENST00000399494 PGPA6NDG6 321 aa20.12■□□□□ 0.81
HMGB1-205ENST00000399494 HTN1P15515 57 aa20.12■□□□□ 0.81
HMGB1-205ENST00000399494 TCTE3Q8IZS6 198 aa20.12■□□□□ 0.81
HMGB1-205ENST00000399494 VGLL1Q99990 258 aa20.12■□□□□ 0.81
HMGB1-205ENST00000399494 CTXND1A0A1B0GTU2 59 aa20.11■□□□□ 0.81
HMGB1-205ENST00000399494 TMEM167BQ9NRX6 74 aa20.11■□□□□ 0.81
HMGB1-205ENST00000399494 H7BYZ3 331 aa20.1■□□□□ 0.81
HMGB1-205ENST00000399494 TAS2R60P59551 318 aa20.1■□□□□ 0.81
HMGB1-205ENST00000399494 SOHLH1Q5JUK2 328 aa20.1■□□□□ 0.81
HMGB1-205ENST00000399494 TMEM88Q6PEY1 159 aa20.1■□□□□ 0.81
HMGB1-205ENST00000399494 SSX7Q7RTT5 188 aa20.1■□□□□ 0.81
HMGB1-205ENST00000399494 TRAV12-3A0A0B4J271 114 aa20.09■□□□□ 0.81
HMGB1-205ENST00000399494 RBAKDNA6NC62 111 aa20.09■□□□□ 0.81
HMGB1-205ENST00000399494 DIRC3C9JPN6 131 aa20.09■□□□□ 0.81
HMGB1-205ENST00000399494 PRM2P04554 102 aa20.09■□□□□ 0.81
HMGB1-205ENST00000399494 SLC25A5P05141 298 aaKnown RBP20.09■□□□□ 0.81
HMGB1-205ENST00000399494 DAD1P61803 113 aa20.09■□□□□ 0.81
HMGB1-205ENST00000399494 C1orf134Q5TEV5 83 aa20.09■□□□□ 0.81
HMGB1-205ENST00000399494 TMUB2Q71RG4 321 aa20.09■□□□□ 0.81
HMGB1-205ENST00000399494 ZNF575Q86XF7 245 aa20.09■□□□□ 0.81
HMGB1-205ENST00000399494 ABCA13Q86UQ4 5058 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms