RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 LINC00477Q96M19 166 aa9.44□□□□□ -0.9
VCX3A-202ENST00000398729 ATP5SQ99766 215 aa9.44□□□□□ -0.9
VCX3A-202ENST00000398729 PYGO2Q9BRQ0 406 aa9.44□□□□□ -0.9
VCX3A-202ENST00000398729 OR51M1Q9H341 326 aa9.44□□□□□ -0.9
VCX3A-202ENST00000398729 SNURFLB1AK76 121 aa9.43□□□□□ -0.9
VCX3A-202ENST00000398729 NBEAP1P0C6P0 100 aa9.43□□□□□ -0.9
VCX3A-202ENST00000398729 ERCC8Q13216 396 aa9.43□□□□□ -0.9
VCX3A-202ENST00000398729 ICAM4Q14773 271 aa9.43□□□□□ -0.9
VCX3A-202ENST00000398729 ATG101Q9BSB4 218 aa9.43□□□□□ -0.9
VCX3A-202ENST00000398729 PAXXQ9BUH6 204 aa9.43□□□□□ -0.9
VCX3A-202ENST00000398729 HSPB11Q9Y547 144 aa9.43□□□□□ -0.9
VCX3A-202ENST00000398729 HERC1Q15751 4861 aa9.42□□□□□ -0.9
VCX3A-202ENST00000398729 IGLV2-18A0A075B6J9 118 aa9.42□□□□□ -0.9
VCX3A-202ENST00000398729 C7orf71A4D174 169 aa9.42□□□□□ -0.9
VCX3A-202ENST00000398729 IFNA5P01569 189 aa9.42□□□□□ -0.9
VCX3A-202ENST00000398729 OR10J4P0C629 311 aa9.42□□□□□ -0.9
VCX3A-202ENST00000398729 RPL12P30050 165 aaKnown RBP9.42□□□□□ -0.9
VCX3A-202ENST00000398729 FAM122CQ6P4D5 195 aa9.42□□□□□ -0.9
VCX3A-202ENST00000398729 SCGB1C1Q8TD33 95 aa9.42□□□□□ -0.9
VCX3A-202ENST00000398729 AGPAT4-IT1Q9H0P7 198 aa9.42□□□□□ -0.9
VCX3A-202ENST00000398729 FUT9Q9Y231 359 aa9.42□□□□□ -0.9
VCX3A-202ENST00000398729 LRP1BQ9NZR2 4599 aa9.41□□□□□ -0.9
VCX3A-202ENST00000398729 KLLNB2CW77 178 aa9.41□□□□□ -0.9
VCX3A-202ENST00000398729 RTL8CO15255 209 aa9.41□□□□□ -0.9
VCX3A-202ENST00000398729 OR7C2O60412 319 aa9.41□□□□□ -0.9
VCX3A-202ENST00000398729 NUDT3O95989 172 aa9.41□□□□□ -0.9
VCX3A-202ENST00000398729 FAM3BP58499 235 aaPredicted RBP9.41□□□□□ -0.9
VCX3A-202ENST00000398729 FFAR4Q5NUL3 377 aa9.41□□□□□ -0.9
VCX3A-202ENST00000398729 TMEM78Q5T7P6 136 aa9.41□□□□□ -0.9
VCX3A-202ENST00000398729 C9orf47Q6ZRZ4 202 aa9.41□□□□□ -0.9
VCX3A-202ENST00000398729 LINC00612Q8N6U2 182 aa9.41□□□□□ -0.9
VCX3A-202ENST00000398729 RNF141Q8WVD5 230 aa9.41□□□□□ -0.9
VCX3A-202ENST00000398729 FXYD5Q96DB9 178 aa9.41□□□□□ -0.9
VCX3A-202ENST00000398729 FAM19A4Q96LR4 140 aa9.41□□□□□ -0.9
VCX3A-202ENST00000398729 SMIM3Q9BZL3 60 aa9.41□□□□□ -0.9
VCX3A-202ENST00000398729 MBD2Q9UBB5 411 aa9.41□□□□□ -0.9
VCX3A-202ENST00000398729 IGKV2-40A0A087WW87 121 aaPredicted RBP9.4□□□□□ -0.9
VCX3A-202ENST00000398729 IGKV2D-40P01614 121 aaPredicted RBP9.4□□□□□ -0.9
VCX3A-202ENST00000398729 GPX1P07203 203 aa9.4□□□□□ -0.9
VCX3A-202ENST00000398729 NMBP08949 121 aa9.4□□□□□ -0.9
VCX3A-202ENST00000398729 NACAE9PAV3 2078 aa9.4□□□□□ -0.91
VCX3A-202ENST00000398729 GAGE12BA1L429 117 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 PRSS29PA6NIE9 313 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 ZNF324O75467 553 aaPredicted RBP9.39□□□□□ -0.91
VCX3A-202ENST00000398729 GAGE7O76087 117 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 GAGE12FP0CL80 117 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 GAGE12GP0CL81 117 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 GAGE12IP0CL82 117 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 CRISP2P16562 243 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 RNASE4P34096 147 aaKnown RBP9.39□□□□□ -0.91
VCX3A-202ENST00000398729 CSN1S1P47710 185 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 TAS2R45P59539 299 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 UBE2L3P68036 154 aaKnown RBP9.39□□□□□ -0.91
VCX3A-202ENST00000398729 CD300CQ08708 224 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 DAZ2Q13117 558 aaKnown RBP9.39□□□□□ -0.91
VCX3A-202ENST00000398729 BTN1A1Q13410 526 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 OR5I1Q13606 314 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 KHDC3LQ587J8 217 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 Q6ZR54 194 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 LYPD1Q8N2G4 141 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 ZNF680Q8NEM1 530 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 PHYHIPLQ96FC7 376 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 VGLL1Q99990 258 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 LINC00467Q9BRT7 94 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 ZNF492Q9P255 531 aa9.39□□□□□ -0.91
VCX3A-202ENST00000398729 CCL18P55774 89 aa9.38□□□□□ -0.91
VCX3A-202ENST00000398729 RANP62826 216 aaKnown RBP9.38□□□□□ -0.91
VCX3A-202ENST00000398729 ANXA2RQ3ZCQ2 193 aa9.38□□□□□ -0.91
VCX3A-202ENST00000398729 SOHLH1Q5JUK2 328 aa9.38□□□□□ -0.91
VCX3A-202ENST00000398729 EIF4E3Q8N5X7 224 aaKnown RBP9.38□□□□□ -0.91
VCX3A-202ENST00000398729 GNPNAT1Q96EK6 184 aaPredicted RBP9.38□□□□□ -0.91
VCX3A-202ENST00000398729 ZNF503Q96F45 646 aa9.38□□□□□ -0.91
VCX3A-202ENST00000398729 ALG5Q9Y673 324 aa9.38□□□□□ -0.91
VCX3A-202ENST00000398729 APOBP04114 4563 aaKnown RBP9.37□□□□□ -0.91
VCX3A-202ENST00000398729 TRAV26-1A0A087WT03 109 aa9.37□□□□□ -0.91
VCX3A-202ENST00000398729 PTTG1O95997 202 aa9.37□□□□□ -0.91
VCX3A-202ENST00000398729 M6PRP20645 277 aa9.37□□□□□ -0.91
VCX3A-202ENST00000398729 ZNF138P52744 262 aa9.37□□□□□ -0.91
VCX3A-202ENST00000398729 ACOT6Q3I5F7 207 aaPredicted RBP9.37□□□□□ -0.91
VCX3A-202ENST00000398729 ZFAND2AQ8N6M9 145 aa9.37□□□□□ -0.91
VCX3A-202ENST00000398729 Q9H3A6 140 aa9.37□□□□□ -0.91
VCX3A-202ENST00000398729 GSN-AS1Q9NRJ2 163 aa9.37□□□□□ -0.91
VCX3A-202ENST00000398729 TRBV7-9A0A0J9YWB2 115 aa9.36□□□□□ -0.91
VCX3A-202ENST00000398729 RBAKDNA6NC62 111 aa9.36□□□□□ -0.91
VCX3A-202ENST00000398729 RGS13O14921 159 aa9.36□□□□□ -0.91
VCX3A-202ENST00000398729 Q6ZTI0 123 aa9.36□□□□□ -0.91
VCX3A-202ENST00000398729 C11orf72Q8NBR9 251 aa9.36□□□□□ -0.91
VCX3A-202ENST00000398729 RXFP4Q8TDU9 374 aa9.36□□□□□ -0.91
VCX3A-202ENST00000398729 WFDC1Q9HC57 220 aa9.36□□□□□ -0.91
VCX3A-202ENST00000398729 DNAH5Q8TE73 4624 aa9.35□□□□□ -0.91
VCX3A-202ENST00000398729 TRGV2A0A075B6R0 118 aa9.35□□□□□ -0.91
VCX3A-202ENST00000398729 A0A0J9YY99 117 aa9.35□□□□□ -0.91
VCX3A-202ENST00000398729 A0A1W2PPV4 95 aa9.35□□□□□ -0.91
VCX3A-202ENST00000398729 H3BNG1 76 aa9.35□□□□□ -0.91
VCX3A-202ENST00000398729 HOXA5P20719 270 aa9.35□□□□□ -0.91
VCX3A-202ENST00000398729 TCL1AP56279 114 aa9.35□□□□□ -0.91
VCX3A-202ENST00000398729 IBA57Q5T440 356 aaKnown RBP9.35□□□□□ -0.91
VCX3A-202ENST00000398729 PRR9Q5T870 116 aa9.35□□□□□ -0.91
VCX3A-202ENST00000398729 C1orf134Q5TEV5 83 aa9.35□□□□□ -0.91
VCX3A-202ENST00000398729 ZNRF2Q8NHG8 242 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms