RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 A0A1W2PPR1 153 aa7.58□□□□□ -1.2
COL6A3-204ENST00000392003 C18orf32Q8TCD1 76 aa7.58□□□□□ -1.2
COL6A3-204ENST00000392003 TRAV8-1A0A0A6YYK1 113 aa7.58□□□□□ -1.2
COL6A3-204ENST00000392003 FAM106CPP0CH98 169 aa7.58□□□□□ -1.2
COL6A3-204ENST00000392003 RNASEKQ6P5S7 137 aaKnown RBP7.58□□□□□ -1.2
COL6A3-204ENST00000392003 IGFBPL1Q8WX77 278 aa7.58□□□□□ -1.2
COL6A3-204ENST00000392003 RCHY1Q96PM5 261 aa7.58□□□□□ -1.2
COL6A3-204ENST00000392003 ANAPC13Q9BS18 74 aa7.58□□□□□ -1.2
COL6A3-204ENST00000392003 BPESC1Q9GZL8 116 aa7.58□□□□□ -1.2
COL6A3-204ENST00000392003 GFRA4Q9GZZ7 299 aa7.58□□□□□ -1.2
COL6A3-204ENST00000392003 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.58□□□□□ -1.2
COL6A3-204ENST00000392003 MT-ATP8P03928 68 aa7.58□□□□□ -1.2
COL6A3-204ENST00000392003 CT45A10P0DMU9 189 aa7.58□□□□□ -1.2
COL6A3-204ENST00000392003 CIARTQ8N365 385 aaPredicted RBP7.58□□□□□ -1.2
COL6A3-204ENST00000392003 SPATA25Q9BR10 227 aa7.58□□□□□ -1.2
COL6A3-204ENST00000392003 PRSS22Q9GZN4 317 aa7.58□□□□□ -1.2
COL6A3-204ENST00000392003 CCDC179H3BU77 68 aa7.57□□□□□ -1.2
COL6A3-204ENST00000392003 OR2J3O76001 311 aa7.57□□□□□ -1.2
COL6A3-204ENST00000392003 LRBAP50851 2863 aa7.57□□□□□ -1.2
COL6A3-204ENST00000392003 IGLV11-55A0A075B6I3 123 aa7.57□□□□□ -1.2
COL6A3-204ENST00000392003 C19orf71A6NCJ1 209 aa7.57□□□□□ -1.2
COL6A3-204ENST00000392003 K7EP34 96 aa7.57□□□□□ -1.2
COL6A3-204ENST00000392003 M0R2Z0 102 aa7.57□□□□□ -1.2
COL6A3-204ENST00000392003 TTC9CQ8N5M4 171 aa7.57□□□□□ -1.2
COL6A3-204ENST00000392003 ZNF418Q8TF45 676 aaPredicted RBP7.57□□□□□ -1.2
COL6A3-204ENST00000392003 RAB37Q96AX2 223 aa7.57□□□□□ -1.2
COL6A3-204ENST00000392003 CCL19Q99731 98 aa7.57□□□□□ -1.2
COL6A3-204ENST00000392003 CITED2Q99967 270 aaPredicted RBP7.57□□□□□ -1.2
COL6A3-204ENST00000392003 EPG5Q9HCE0 2579 aa7.57□□□□□ -1.2
COL6A3-204ENST00000392003 WI2-2373I1.2A0A1W2PRP0 233 aa7.57□□□□□ -1.2
COL6A3-204ENST00000392003 HOXB4P17483 251 aaPredicted RBP7.57□□□□□ -1.2
COL6A3-204ENST00000392003 LINC00322Q6ZN03 302 aaPredicted RBP7.57□□□□□ -1.2
COL6A3-204ENST00000392003 SPATA12Q7Z6I5 190 aa7.57□□□□□ -1.2
COL6A3-204ENST00000392003 A0A087WX48 190 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 VWC2LB2RUY7 222 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 RPL7P18124 248 aaKnown RBP7.56□□□□□ -1.2
COL6A3-204ENST00000392003 KLF5Q13887 457 aaPredicted RBP7.56□□□□□ -1.2
COL6A3-204ENST00000392003 GDF5OSQ5U4N7 250 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 TMEM75Q8N9X5 138 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 FANCD2OSQ96PS1 177 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 RELNP78509 3460 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 TRBV6-1A0A0K0K1D8 114 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 A0A1B0GXF2 115 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 CD5LO43866 347 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 SPINK8P0C7L1 97 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 SMIM17P0DL12 118 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 RIGQ13278 110 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 SH2D6Q7Z4S9 175 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 MTURNQ8N3F0 131 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 C17orf77Q96MU5 243 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 TMUB1Q9BVT8 246 aa7.56□□□□□ -1.2
COL6A3-204ENST00000392003 ZFP36P26651 326 aaKnown RBP7.55□□□□□ -1.2
COL6A3-204ENST00000392003 PDE6HQ13956 83 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 MRPL23Q16540 153 aaKnown RBP7.55□□□□□ -1.2
COL6A3-204ENST00000392003 SIGLEC15Q6ZMC9 328 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 ZNF414Q96IQ9 312 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 SPAG8Q99932 426 aaPredicted RBP7.55□□□□□ -1.2
COL6A3-204ENST00000392003 LRRK2Q5S007 2527 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 IGHV3-23P01764 117 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 DYNAPQ8N1N2 210 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 OR2K2Q8NGT1 345 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 TPPP3Q9BW30 176 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 RABAC1Q9UI14 185 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 ZNF462Q96JM2 2506 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 PRB1P04280 392 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 UBE2E1P51965 193 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 NDPQ00604 133 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 SRSF1Q07955 248 aaKnown RBP eCLIP7.55□□□□□ -1.2
COL6A3-204ENST00000392003 EBI3Q14213 229 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 ADAMTSL5Q6ZMM2 481 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 GTSF1Q8WW33 167 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 C20orf78Q9BR46 151 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 SIRPDQ9H106 197 aa7.55□□□□□ -1.2
COL6A3-204ENST00000392003 Q8N6K4 173 aa7.54□□□□□ -1.2
COL6A3-204ENST00000392003 A0A1B0GUT8 65 aa7.54□□□□□ -1.2
COL6A3-204ENST00000392003 hDV102S1A0JD36 115 aa7.54□□□□□ -1.2
COL6A3-204ENST00000392003 NHLRC4P0CG21 123 aaPredicted RBP7.54□□□□□ -1.2
COL6A3-204ENST00000392003 FOXA3P55318 350 aaPredicted RBP7.54□□□□□ -1.2
COL6A3-204ENST00000392003 PTH2Q96A98 100 aa7.54□□□□□ -1.2
COL6A3-204ENST00000392003 BSNQ9UPA5 3926 aa7.54□□□□□ -1.2
COL6A3-204ENST00000392003 ITPR1Q14643 2758 aa7.54□□□□□ -1.2
COL6A3-204ENST00000392003 IGHV3OR16-10A0A075B7F0 116 aa7.54□□□□□ -1.2
COL6A3-204ENST00000392003 NPIPB6E9PJ23 425 aa7.54□□□□□ -1.2
COL6A3-204ENST00000392003 M0R3E3 92 aa7.54□□□□□ -1.2
COL6A3-204ENST00000392003 IGLV2-11P01706 119 aa7.54□□□□□ -1.2
COL6A3-204ENST00000392003 ECSCRQ19T08 205 aa7.54□□□□□ -1.2
COL6A3-204ENST00000392003 C8orf86Q6ZUL3 223 aa7.54□□□□□ -1.2
COL6A3-204ENST00000392003 SPCS1Q9Y6A9 102 aa7.54□□□□□ -1.2
COL6A3-204ENST00000392003 DOPEY1Q5JWR5 2465 aa7.54□□□□□ -1.2
COL6A3-204ENST00000392003 TNFRSF6BO95407 300 aa7.53□□□□□ -1.2
COL6A3-204ENST00000392003 PMCHL1Q16048 86 aa7.53□□□□□ -1.2
COL6A3-204ENST00000392003 TRAV9-2A0A087WT02 112 aa7.53□□□□□ -1.2
COL6A3-204ENST00000392003 IGHV7-81A0A0B4J1V7 117 aa7.53□□□□□ -1.2
COL6A3-204ENST00000392003 A1L4Q6 167 aa7.53□□□□□ -1.2
COL6A3-204ENST00000392003 HAX1O00165 279 aa7.53□□□□□ -1.2
COL6A3-204ENST00000392003 EDN2P20800 178 aa7.53□□□□□ -1.2
COL6A3-204ENST00000392003 WFDC2Q14508 124 aa7.53□□□□□ -1.2
COL6A3-204ENST00000392003 Q6AWC8 147 aa7.53□□□□□ -1.2
COL6A3-204ENST00000392003 Q8N9W7 124 aa7.53□□□□□ -1.2
COL6A3-204ENST00000392003 RAX2Q96IS3 184 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms