RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 IGHV3OR16-10A0A075B7F0 116 aa11.36□□□□□ -0.59
RTF1-201ENST00000389629 IGLV2-8P01709 118 aa11.36□□□□□ -0.59
RTF1-201ENST00000389629 GATA4P43694 442 aa11.36□□□□□ -0.59
RTF1-201ENST00000389629 ATG2AQ2TAZ0 1938 aa11.36□□□□□ -0.59
RTF1-201ENST00000389629 C9JAW5 83 aa11.35□□□□□ -0.59
RTF1-201ENST00000389629 EFNA4P52798 201 aa11.35□□□□□ -0.59
RTF1-201ENST00000389629 LYPD1Q8N2G4 141 aa11.35□□□□□ -0.59
RTF1-201ENST00000389629 EEF1AKMT3Q96AZ1 226 aa11.35□□□□□ -0.59
RTF1-201ENST00000389629 TRAV8-4A0A0B4J246 113 aa11.35□□□□□ -0.59
RTF1-201ENST00000389629 C14orf178Q8N769 122 aaPredicted RBP11.35□□□□□ -0.59
RTF1-201ENST00000389629 DSCAML1Q8TD84 2053 aa11.35□□□□□ -0.59
RTF1-201ENST00000389629 C10orf142B7Z368 130 aa11.35□□□□□ -0.59
RTF1-201ENST00000389629 NEU4Q8WWR8 484 aaPredicted RBP11.35□□□□□ -0.59
RTF1-201ENST00000389629 LRP4O75096 1905 aa11.35□□□□□ -0.59
RTF1-201ENST00000389629 DYSFO75923 2080 aa11.35□□□□□ -0.59
RTF1-201ENST00000389629 C12orf74Q32Q52 190 aa11.35□□□□□ -0.59
RTF1-201ENST00000389629 ID1P41134 155 aa11.34□□□□□ -0.59
RTF1-201ENST00000389629 LINC01559Q495D7 138 aa11.34□□□□□ -0.59
RTF1-201ENST00000389629 THAP8Q8NA92 274 aa11.34□□□□□ -0.59
RTF1-201ENST00000389629 ANXA2RQ3ZCQ2 193 aa11.34□□□□□ -0.59
RTF1-201ENST00000389629 TRBV25-1A0A075B6N4 114 aa11.34□□□□□ -0.59
RTF1-201ENST00000389629 SIVA1O15304 175 aa11.34□□□□□ -0.59
RTF1-201ENST00000389629 BUB1B-PAK6H3BSN5 160 aa11.34□□□□□ -0.59
RTF1-201ENST00000389629 PAX1P15863 534 aa11.34□□□□□ -0.59
RTF1-201ENST00000389629 NPC2P61916 151 aa11.34□□□□□ -0.59
RTF1-201ENST00000389629 EIF4EBP1Q13541 118 aaPredicted RBP11.34□□□□□ -0.59
RTF1-201ENST00000389629 PPP1R17O96001 155 aa11.33□□□□□ -0.6
RTF1-201ENST00000389629 SLC25A16P16260 332 aa11.33□□□□□ -0.6
RTF1-201ENST00000389629 GATA1P15976 413 aaPredicted RBP11.33□□□□□ -0.6
RTF1-201ENST00000389629 SLC50A1Q9BRV3 221 aa11.33□□□□□ -0.6
RTF1-201ENST00000389629 PAPPA-AS1Q5QFB9 102 aa11.33□□□□□ -0.6
RTF1-201ENST00000389629 RNF182Q8N6D2 247 aa11.33□□□□□ -0.6
RTF1-201ENST00000389629 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.33□□□□□ -0.6
RTF1-201ENST00000389629 ABHD17AQ96GS6 310 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 IGKV3D-20A0A0C4DH25 116 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 A0A0U1RRA0 63 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 E7EUB6 86 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 TRGV3P03979 118 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 KLRD1Q13241 179 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 LINC00322Q6ZN03 302 aaPredicted RBP11.32□□□□□ -0.6
RTF1-201ENST00000389629 CEACAM4O75871 244 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 IGHV3-11P01762 117 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 SCGB1A1P11684 91 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 LY6EQ16553 131 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 MEIG1Q5JSS6 88 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 PRR25Q96S07 402 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 LINC00527Q9UJ94 153 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 IGLV3-9A0A075B6K5 115 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 NDPQ00604 133 aa11.32□□□□□ -0.6
RTF1-201ENST00000389629 MRPL36Q9P0J6 103 aaKnown RBP11.32□□□□□ -0.6
RTF1-201ENST00000389629 WISP2O76076 250 aa11.31□□□□□ -0.6
RTF1-201ENST00000389629 FAM106AQ4KMX7 169 aa11.31□□□□□ -0.6
RTF1-201ENST00000389629 LOXL1Q08397 574 aaPredicted RBP11.31□□□□□ -0.6
RTF1-201ENST00000389629 C15orf32Q32M92 178 aa11.31□□□□□ -0.6
RTF1-201ENST00000389629 C1orf229Q6ZS94 237 aaPredicted RBP11.31□□□□□ -0.6
RTF1-201ENST00000389629 TTC28Q96AY4 2481 aa11.31□□□□□ -0.6
RTF1-201ENST00000389629 NUP37Q8NFH4 326 aa11.31□□□□□ -0.6
RTF1-201ENST00000389629 IGLL5B9A064 214 aa11.31□□□□□ -0.6
RTF1-201ENST00000389629 CIRBPQ14011 172 aaKnown RBP11.31□□□□□ -0.6
RTF1-201ENST00000389629 HCFC1P51610 2035 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 C22orf46C9J442 243 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 CD7P09564 240 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 MSRB1Q9NZV6 116 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 C3orf36Q3SXR2 165 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 SS18L2Q9UHA2 77 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 MYMXA0A1B0GTQ4 84 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 LHBP01229 141 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 LOXP28300 417 aaPredicted RBP11.3□□□□□ -0.6
RTF1-201ENST00000389629 MSMPQ1L6U9 139 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 DTX2Q86UW9 622 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 BOD1L2Q8IYS8 172 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 Q8N8P6 123 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 PPDPFLQ8WWR9 84 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 TRAV21A0A0B4J279 112 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 HLA-DRB4P13762 266 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 SP5Q6BEB4 398 aaPredicted RBP11.3□□□□□ -0.6
RTF1-201ENST00000389629 Q8N976 141 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 HLA-DRB4X5D2U9 266 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 KIAA1549Q9HCM3 1950 aa11.3□□□□□ -0.6
RTF1-201ENST00000389629 PRADC1Q9BSG0 188 aa11.29□□□□□ -0.6
RTF1-201ENST00000389629 SRD5A1P18405 259 aa11.29□□□□□ -0.6
RTF1-201ENST00000389629 IL17RELQ6ZVW7 336 aa11.29□□□□□ -0.6
RTF1-201ENST00000389629 Q8N7P7 452 aa11.29□□□□□ -0.6
RTF1-201ENST00000389629 ZNF48Q96MX3 618 aaPredicted RBP11.29□□□□□ -0.6
RTF1-201ENST00000389629 A0A0G2JNJ9 132 aa11.29□□□□□ -0.6
RTF1-201ENST00000389629 B5MCH6 92 aa11.29□□□□□ -0.6
RTF1-201ENST00000389629 TEX36Q5VZQ5 186 aa11.29□□□□□ -0.6
RTF1-201ENST00000389629 Q9UFV3 132 aa11.29□□□□□ -0.6
RTF1-201ENST00000389629 LAMA2P24043 3122 aaKnown RBP11.29□□□□□ -0.6
RTF1-201ENST00000389629 TRAV26-1A0A087WT03 109 aa11.29□□□□□ -0.6
RTF1-201ENST00000389629 EGR2P11161 476 aaPredicted RBP11.29□□□□□ -0.6
RTF1-201ENST00000389629 HLA-DMBP28068 263 aa11.29□□□□□ -0.6
RTF1-201ENST00000389629 TNRC6AQ8NDV7 1962 aaKnown RBP11.28□□□□□ -0.6
RTF1-201ENST00000389629 GP9P14770 177 aa11.28□□□□□ -0.6
RTF1-201ENST00000389629 PDE6HQ13956 83 aa11.28□□□□□ -0.6
RTF1-201ENST00000389629 FOXI2Q6ZQN5 318 aa11.28□□□□□ -0.6
RTF1-201ENST00000389629 RITA1Q96K30 269 aa11.28□□□□□ -0.6
RTF1-201ENST00000389629 CHD7Q9P2D1 2997 aa11.28□□□□□ -0.6
RTF1-201ENST00000389629 SUMO2P61956 95 aaKnown RBP11.28□□□□□ -0.6
RTF1-201ENST00000389629 RRN3P1Q2M238 152 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms