RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 COX8CQ7Z4L0 72 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 LINC01006Q8NI28 216 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 TSKUQ8WUA8 353 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 C16orf95Q9H693 158 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 FN1P02751 2386 aaKnown RBP10.42□□□□□ -0.74
PTPRF-202ENST00000372405 RBAKDNA6NC62 111 aa10.42□□□□□ -0.74
PTPRF-202ENST00000372405 SPINK4O60575 86 aa10.42□□□□□ -0.74
PTPRF-202ENST00000372405 P01737 135 aa10.42□□□□□ -0.74
PTPRF-202ENST00000372405 TRGC1P0CF51 173 aa10.42□□□□□ -0.74
PTPRF-202ENST00000372405 RPL11P62913 178 aaKnown RBP10.42□□□□□ -0.74
PTPRF-202ENST00000372405 ACTL10Q5JWF8 245 aa10.42□□□□□ -0.74
PTPRF-202ENST00000372405 TCF24Q7RTU0 167 aa10.42□□□□□ -0.74
PTPRF-202ENST00000372405 DUX3Q96PT4 197 aa10.42□□□□□ -0.74
PTPRF-202ENST00000372405 NEU1Q99519 415 aa10.42□□□□□ -0.74
PTPRF-202ENST00000372405 AGPAT4-IT1Q9H0P7 198 aa10.42□□□□□ -0.74
PTPRF-202ENST00000372405 INAFM1C9JVW0 142 aa10.41□□□□□ -0.74
PTPRF-202ENST00000372405 SNRPEP62304 92 aaKnown RBP10.41□□□□□ -0.74
PTPRF-202ENST00000372405 CT83Q5H943 113 aa10.41□□□□□ -0.74
PTPRF-202ENST00000372405 KHDC1LQ5JSQ8 128 aa10.41□□□□□ -0.74
PTPRF-202ENST00000372405 ADAMTSL5Q6ZMM2 481 aa10.41□□□□□ -0.74
PTPRF-202ENST00000372405 NUP35Q8NFH5 326 aa10.41□□□□□ -0.74
PTPRF-202ENST00000372405 OR11H1Q8NG94 326 aa10.41□□□□□ -0.74
PTPRF-202ENST00000372405 GTSF1Q8WW33 167 aa10.41□□□□□ -0.74
PTPRF-202ENST00000372405 C5orf52A6NGY3 159 aa10.41□□□□□ -0.74
PTPRF-202ENST00000372405 FBLL1A6NHQ2 334 aaKnown RBP10.41□□□□□ -0.74
PTPRF-202ENST00000372405 ZNF80P51504 273 aaPredicted RBP10.41□□□□□ -0.74
PTPRF-202ENST00000372405 DEFB1P60022 68 aa10.41□□□□□ -0.74
PTPRF-202ENST00000372405 RPL19P84098 196 aaKnown RBP10.41□□□□□ -0.74
PTPRF-202ENST00000372405 C11orf44Q8N8P7 122 aa10.41□□□□□ -0.74
PTPRF-202ENST00000372405 KLHL30-AS1Q8NEE0 82 aa10.41□□□□□ -0.74
PTPRF-202ENST00000372405 DAZAP1Q96EP5 407 aaKnown RBP10.41□□□□□ -0.74
PTPRF-202ENST00000372405 IZUMO1RA6ND01 250 aa10.4□□□□□ -0.74
PTPRF-202ENST00000372405 C2orf70A6NJV1 201 aa10.4□□□□□ -0.74
PTPRF-202ENST00000372405 HIGD1CA8MV81 97 aa10.4□□□□□ -0.74
PTPRF-202ENST00000372405 LINC01619G3V211 115 aa10.4□□□□□ -0.74
PTPRF-202ENST00000372405 ZNF705DP0CH99 300 aaPredicted RBP10.4□□□□□ -0.74
PTPRF-202ENST00000372405 ZNF705BP0CI00 300 aaPredicted RBP10.4□□□□□ -0.74
PTPRF-202ENST00000372405 CD28P10747 220 aa10.4□□□□□ -0.74
PTPRF-202ENST00000372405 CBLN1P23435 193 aa10.4□□□□□ -0.74
PTPRF-202ENST00000372405 FABP9Q0Z7S8 132 aa10.4□□□□□ -0.74
PTPRF-202ENST00000372405 SAPCD1Q5SSQ6 148 aa10.4□□□□□ -0.74
PTPRF-202ENST00000372405 DCANP1Q8TF63 244 aa10.4□□□□□ -0.74
PTPRF-202ENST00000372405 CLEC5AQ9NY25 188 aa10.4□□□□□ -0.74
PTPRF-202ENST00000372405 GZMBP10144 247 aa10.39□□□□□ -0.75
PTPRF-202ENST00000372405 MRPL54Q6P161 138 aaKnown RBP10.39□□□□□ -0.75
PTPRF-202ENST00000372405 C9orf47Q6ZRZ4 202 aa10.39□□□□□ -0.75
PTPRF-202ENST00000372405 ZNF738Q8NE65 137 aa10.39□□□□□ -0.75
PTPRF-202ENST00000372405 OR4B1Q8NGF8 309 aa10.39□□□□□ -0.75
PTPRF-202ENST00000372405 OR2D3Q8NGH3 330 aa10.39□□□□□ -0.75
PTPRF-202ENST00000372405 OR1N2Q8NGR9 330 aa10.39□□□□□ -0.75
PTPRF-202ENST00000372405 NAT8BQ9UHF3 227 aa10.39□□□□□ -0.75
PTPRF-202ENST00000372405 TRAPPC1Q9Y5R8 145 aa10.39□□□□□ -0.75
PTPRF-202ENST00000372405 A8MWL6 223 aa10.38□□□□□ -0.75
PTPRF-202ENST00000372405 SH2D1AO60880 128 aa10.38□□□□□ -0.75
PTPRF-202ENST00000372405 CT45A10P0DMU9 189 aa10.38□□□□□ -0.75
PTPRF-202ENST00000372405 MS4A6AQ9H2W1 248 aa10.38□□□□□ -0.75
PTPRF-202ENST00000372405 S100A6P06703 90 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 ZNF138P52744 262 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 SRSF2Q01130 221 aaKnown RBP10.37□□□□□ -0.75
PTPRF-202ENST00000372405 FAM162BQ5T6X4 162 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 ZNF575Q86XF7 245 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 DLX4Q92988 240 aaPredicted RBP10.37□□□□□ -0.75
PTPRF-202ENST00000372405 F6UB75 175 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 NDUFA7O95182 113 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 FOSL1P15407 271 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 AKR1D1P51857 326 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 NDUFA6P56556 154 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 GDF5OSQ5U4N7 250 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 TMEM136Q6ZRR5 245 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 WFDC12Q8WWY7 111 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 DPF1Q92782 380 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 RAX2Q96IS3 184 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 CITED2Q99967 270 aaPredicted RBP10.37□□□□□ -0.75
PTPRF-202ENST00000372405 GFRA4Q9GZZ7 299 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 PPP1R14DQ9NXH3 145 aa10.37□□□□□ -0.75
PTPRF-202ENST00000372405 A0A1W2PRX2 142 aa10.36□□□□□ -0.75
PTPRF-202ENST00000372405 SNURFLB1AK76 121 aa10.36□□□□□ -0.75
PTPRF-202ENST00000372405 HAX1O00165 279 aa10.36□□□□□ -0.75
PTPRF-202ENST00000372405 UBE2CO00762 179 aa10.36□□□□□ -0.75
PTPRF-202ENST00000372405 BMI1P35226 326 aa10.36□□□□□ -0.75
PTPRF-202ENST00000372405 TMEM78Q5T7P6 136 aa10.36□□□□□ -0.75
PTPRF-202ENST00000372405 WFDC3Q8IUB2 231 aa10.36□□□□□ -0.75
PTPRF-202ENST00000372405 GNB1LQ9BYB4 327 aa10.36□□□□□ -0.75
PTPRF-202ENST00000372405 WNK1Q9H4A3 2382 aa10.36□□□□□ -0.75
PTPRF-202ENST00000372405 A0A1B0GXF2 115 aa10.35□□□□□ -0.75
PTPRF-202ENST00000372405 FAM231BA6NCW3 169 aa10.35□□□□□ -0.75
PTPRF-202ENST00000372405 FOXA3P55318 350 aaPredicted RBP10.35□□□□□ -0.75
PTPRF-202ENST00000372405 FHL3Q13643 280 aa10.35□□□□□ -0.75
PTPRF-202ENST00000372405 OR9G4Q8NGQ1 327 aa10.35□□□□□ -0.75
PTPRF-202ENST00000372405 PGLYRP4Q96LB8 373 aa10.35□□□□□ -0.75
PTPRF-202ENST00000372405 NDFIP1Q9BT67 221 aa10.35□□□□□ -0.75
PTPRF-202ENST00000372405 MRPL18Q9H0U6 180 aaKnown RBP10.35□□□□□ -0.75
PTPRF-202ENST00000372405 SORL1Q92673 2214 aa10.35□□□□□ -0.75
PTPRF-202ENST00000372405 K7EQG2 157 aa10.35□□□□□ -0.75
PTPRF-202ENST00000372405 OVOL1O14753 267 aa10.35□□□□□ -0.75
PTPRF-202ENST00000372405 TFPI2P48307 235 aa10.35□□□□□ -0.75
PTPRF-202ENST00000372405 PROK1P58294 105 aa10.35□□□□□ -0.75
PTPRF-202ENST00000372405 Q6ZQT7 251 aa10.35□□□□□ -0.75
PTPRF-202ENST00000372405 JMJD8Q96S16 334 aa10.35□□□□□ -0.75
PTPRF-202ENST00000372405 PRR9Q5T870 116 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms