RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 SHISA9B4DS77 424 aa12.86□□□□□ -0.35
COL18A1-203ENST00000359759 NBL1P41271 181 aa12.86□□□□□ -0.35
COL18A1-203ENST00000359759 RNF223E7ERA6 249 aa12.86□□□□□ -0.35
COL18A1-203ENST00000359759 COL5A3P25940 1745 aaPredicted RBP12.86□□□□□ -0.35
COL18A1-203ENST00000359759 OR11H6Q8NGC7 330 aa12.86□□□□□ -0.35
COL18A1-203ENST00000359759 CD59P13987 128 aa12.85□□□□□ -0.35
COL18A1-203ENST00000359759 PDE6HQ13956 83 aa12.85□□□□□ -0.35
COL18A1-203ENST00000359759 C3orf56Q8N813 242 aa12.85□□□□□ -0.35
COL18A1-203ENST00000359759 IGHV1OR15-1A0A075B7D0 117 aa12.85□□□□□ -0.35
COL18A1-203ENST00000359759 ZNF726P1Q15940 193 aa12.85□□□□□ -0.35
COL18A1-203ENST00000359759 DKK2Q9UBU2 259 aa12.85□□□□□ -0.35
COL18A1-203ENST00000359759 IGF2BP2-AS1Q96M15 143 aa12.85□□□□□ -0.35
COL18A1-203ENST00000359759 NPYP01303 97 aa12.84□□□□□ -0.35
COL18A1-203ENST00000359759 LRRC37AA6NMS7 1700 aa12.84□□□□□ -0.35
COL18A1-203ENST00000359759 SBF2Q86WG5 1849 aa12.84□□□□□ -0.35
COL18A1-203ENST00000359759 SMIM27A0A1W2PRY6 76 aa12.84□□□□□ -0.35
COL18A1-203ENST00000359759 V9GYV3 84 aa12.84□□□□□ -0.35
COL18A1-203ENST00000359759 TRBV19A0A075B6N1 114 aa12.84□□□□□ -0.35
COL18A1-203ENST00000359759 NTN3O00634 580 aaPredicted RBP12.84□□□□□ -0.35
COL18A1-203ENST00000359759 E7EQL1 145 aa12.84□□□□□ -0.35
COL18A1-203ENST00000359759 KLF2Q9Y5W3 355 aaPredicted RBP12.84□□□□□ -0.35
COL18A1-203ENST00000359759 A0A0G2JMZ2 1700 aa12.83□□□□□ -0.35
COL18A1-203ENST00000359759 LRRC37A2A6NM11 1700 aa12.83□□□□□ -0.35
COL18A1-203ENST00000359759 DUX4L9Q6RFH8 374 aaPredicted RBP12.83□□□□□ -0.36
COL18A1-203ENST00000359759 CACNA1DQ01668 2161 aa12.83□□□□□ -0.36
COL18A1-203ENST00000359759 FNDC10F2Z333 226 aa12.83□□□□□ -0.36
COL18A1-203ENST00000359759 ANGP03950 147 aaKnown RBP12.83□□□□□ -0.36
COL18A1-203ENST00000359759 MAP1BP46821 2468 aaKnown RBP12.83□□□□□ -0.36
COL18A1-203ENST00000359759 IGHV4-28A0A0C4DH34 117 aa12.83□□□□□ -0.36
COL18A1-203ENST00000359759 IGKV1-6A0A0C4DH72 117 aa12.83□□□□□ -0.36
COL18A1-203ENST00000359759 Q6ZVH6 145 aa12.83□□□□□ -0.36
COL18A1-203ENST00000359759 ZC2HC1AQ96GY0 325 aa12.83□□□□□ -0.36
COL18A1-203ENST00000359759 RNF114Q9Y508 228 aa12.83□□□□□ -0.36
COL18A1-203ENST00000359759 Q71RC1 249 aaPredicted RBP12.82□□□□□ -0.36
COL18A1-203ENST00000359759 NTN5Q8WTR8 489 aaPredicted RBP12.82□□□□□ -0.36
COL18A1-203ENST00000359759 TRAV13-2A0A0B4J235 113 aa12.82□□□□□ -0.36
COL18A1-203ENST00000359759 UNQ6494/PRO21346Q6UXR6 183 aa12.82□□□□□ -0.36
COL18A1-203ENST00000359759 FAM110DQ8TAY7 271 aaPredicted RBP12.82□□□□□ -0.36
COL18A1-203ENST00000359759 TMEM14BQ9NUH8 114 aa12.82□□□□□ -0.36
COL18A1-203ENST00000359759 RHODO00212 210 aa12.81□□□□□ -0.36
COL18A1-203ENST00000359759 LGALS9BQ3B8N2 356 aa12.81□□□□□ -0.36
COL18A1-203ENST00000359759 LGALS9CQ6DKI2 356 aa12.81□□□□□ -0.36
COL18A1-203ENST00000359759 SMIM2Q9BVW6 85 aa12.81□□□□□ -0.36
COL18A1-203ENST00000359759 XIRP1Q702N8 1843 aaKnown RBP12.81□□□□□ -0.36
COL18A1-203ENST00000359759 XCL1P47992 114 aa12.81□□□□□ -0.36
COL18A1-203ENST00000359759 MDS2Q8NDY4 140 aa12.81□□□□□ -0.36
COL18A1-203ENST00000359759 TPSG1Q9NRR2 321 aa12.81□□□□□ -0.36
COL18A1-203ENST00000359759 NDUFA4L2Q9NRX3 87 aa12.81□□□□□ -0.36
COL18A1-203ENST00000359759 B5MCH6 92 aa12.81□□□□□ -0.36
COL18A1-203ENST00000359759 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.81□□□□□ -0.36
COL18A1-203ENST00000359759 CFHR4Q92496 578 aa12.81□□□□□ -0.36
COL18A1-203ENST00000359759 IGHV2-70P01814 119 aa12.8□□□□□ -0.36
COL18A1-203ENST00000359759 TMEM258P61165 79 aa12.8□□□□□ -0.36
COL18A1-203ENST00000359759 ABCA7Q8IZY2 2146 aa12.8□□□□□ -0.36
COL18A1-203ENST00000359759 CACNA1GO43497 2377 aa12.8□□□□□ -0.36
COL18A1-203ENST00000359759 J3QQQ9 107 aa12.8□□□□□ -0.36
COL18A1-203ENST00000359759 C12orf74Q32Q52 190 aa12.8□□□□□ -0.36
COL18A1-203ENST00000359759 EGR2P11161 476 aaPredicted RBP12.8□□□□□ -0.36
COL18A1-203ENST00000359759 B3GALT5-AS1P59052 145 aa12.8□□□□□ -0.36
COL18A1-203ENST00000359759 SPANXA1Q9NS26 97 aa12.8□□□□□ -0.36
COL18A1-203ENST00000359759 C22orf46C9J442 243 aa12.79□□□□□ -0.36
COL18A1-203ENST00000359759 SPRY2O43597 315 aa12.79□□□□□ -0.36
COL18A1-203ENST00000359759 PTPRDP23468 1912 aa12.79□□□□□ -0.36
COL18A1-203ENST00000359759 NDUFS7O75251 213 aa12.79□□□□□ -0.36
COL18A1-203ENST00000359759 Q6ZQT7 251 aa12.79□□□□□ -0.36
COL18A1-203ENST00000359759 A0A0J9YY99 117 aa12.79□□□□□ -0.36
COL18A1-203ENST00000359759 PRR25Q96S07 402 aa12.79□□□□□ -0.36
COL18A1-203ENST00000359759 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.79□□□□□ -0.36
COL18A1-203ENST00000359759 IGKV2-29A2NJV5 120 aaPredicted RBP12.79□□□□□ -0.36
COL18A1-203ENST00000359759 CCL25O15444 150 aa12.79□□□□□ -0.36
COL18A1-203ENST00000359759 CDKN1BP46527 198 aa12.79□□□□□ -0.36
COL18A1-203ENST00000359759 ARTNQ5T4W7 220 aa12.78□□□□□ -0.36
COL18A1-203ENST00000359759 BAALC-AS2P0C853 105 aa12.78□□□□□ -0.36
COL18A1-203ENST00000359759 HLA-DMBP28068 263 aa12.78□□□□□ -0.36
COL18A1-203ENST00000359759 ALPK2Q86TB3 2170 aa12.78□□□□□ -0.36
COL18A1-203ENST00000359759 IGKV1OR2-108A0A075B7D4 117 aa12.78□□□□□ -0.36
COL18A1-203ENST00000359759 DOCK11Q5JSL3 2073 aa12.78□□□□□ -0.36
COL18A1-203ENST00000359759 H3BRN7 92 aa12.78□□□□□ -0.36
COL18A1-203ENST00000359759 C1orf43Q9BWL3 253 aa12.78□□□□□ -0.36
COL18A1-203ENST00000359759 UBE2BP63146 152 aa12.77□□□□□ -0.36
COL18A1-203ENST00000359759 LCTP09848 1927 aa12.77□□□□□ -0.36
COL18A1-203ENST00000359759 K7EMI3 77 aa12.77□□□□□ -0.36
COL18A1-203ENST00000359759 HERVK_113P63121 156 aa12.77□□□□□ -0.36
COL18A1-203ENST00000359759 Q6ZS49 121 aa12.77□□□□□ -0.36
COL18A1-203ENST00000359759 WDR90Q96KV7 1748 aa12.77□□□□□ -0.37
COL18A1-203ENST00000359759 THADAQ6YHU6 1953 aa12.77□□□□□ -0.37
COL18A1-203ENST00000359759 CSRP1P21291 193 aaKnown RBP12.77□□□□□ -0.37
COL18A1-203ENST00000359759 YPEL3P61236 119 aaPredicted RBP12.77□□□□□ -0.37
COL18A1-203ENST00000359759 PRR30Q53SZ7 412 aaPredicted RBP12.77□□□□□ -0.37
COL18A1-203ENST00000359759 FAM120AOSQ5T036 256 aa12.77□□□□□ -0.37
COL18A1-203ENST00000359759 CHKB-CPT1BH3BT56 60 aa12.77□□□□□ -0.37
COL18A1-203ENST00000359759 IGHG2P01859 326 aa12.77□□□□□ -0.37
COL18A1-203ENST00000359759 MSMBP08118 114 aa12.77□□□□□ -0.37
COL18A1-203ENST00000359759 DOCK9Q9BZ29 2069 aa12.77□□□□□ -0.37
COL18A1-203ENST00000359759 F8VRH5 84 aa12.76□□□□□ -0.37
COL18A1-203ENST00000359759 ZNF833PQ6ZTB9 187 aa12.76□□□□□ -0.37
COL18A1-203ENST00000359759 GNRH2O43555 120 aa12.76□□□□□ -0.37
COL18A1-203ENST00000359759 WDR86Q86TI4 376 aa12.76□□□□□ -0.37
COL18A1-203ENST00000359759 WFDC9Q8NEX5 89 aa12.76□□□□□ -0.37
COL18A1-203ENST00000359759 C17orf77Q96MU5 243 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms