RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PRIMA1Q86XR5 153 aa15.68■□□□□ 0.1
CCDC88B-202ENST00000356786 IGLV3-1P01715 115 aa15.68■□□□□ 0.1
CCDC88B-202ENST00000356786 PRADC1Q9BSG0 188 aa15.68■□□□□ 0.1
CCDC88B-202ENST00000356786 HTN3P15516 51 aa15.67■□□□□ 0.1
CCDC88B-202ENST00000356786 TCF15Q12870 199 aa15.67■□□□□ 0.1
CCDC88B-202ENST00000356786 ZNF747Q9BV97 191 aa15.67■□□□□ 0.1
CCDC88B-202ENST00000356786 PF4P02776 101 aa15.67■□□□□ 0.1
CCDC88B-202ENST00000356786 S100A7L2Q5SY68 101 aa15.67■□□□□ 0.1
CCDC88B-202ENST00000356786 PRR25Q96S07 402 aa15.67■□□□□ 0.1
CCDC88B-202ENST00000356786 DKK2Q9UBU2 259 aa15.67■□□□□ 0.1
CCDC88B-202ENST00000356786 CEND1Q8N111 149 aa15.66■□□□□ 0.1
CCDC88B-202ENST00000356786 JPT2Q9H910 190 aa15.66■□□□□ 0.1
CCDC88B-202ENST00000356786 TRBV7-1A0A0A6YYK4 115 aa15.66■□□□□ 0.1
CCDC88B-202ENST00000356786 MINOS1Q5TGZ0 78 aa15.66■□□□□ 0.1
CCDC88B-202ENST00000356786 MINOS1-NBL1R4GNA1 71 aa15.66■□□□□ 0.1
CCDC88B-202ENST00000356786 A0A1W2PRX2 142 aa15.66■□□□□ 0.1
CCDC88B-202ENST00000356786 NEGR1Q7Z3B1 354 aa15.66■□□□□ 0.1
CCDC88B-202ENST00000356786 Q6ZR03 302 aa15.65■□□□□ 0.1
CCDC88B-202ENST00000356786 FXYD5Q96DB9 178 aa15.65■□□□□ 0.1
CCDC88B-202ENST00000356786 TICRRQ7Z2Z1 1910 aa15.65■□□□□ 0.1
CCDC88B-202ENST00000356786 TRAV13-1A0A0B4J241 112 aa15.65■□□□□ 0.1
CCDC88B-202ENST00000356786 ZC2HC1AQ96GY0 325 aa15.65■□□□□ 0.1
CCDC88B-202ENST00000356786 SRSF8Q9BRL6 282 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-202ENST00000356786 FGF6P10767 208 aa15.65■□□□□ 0.1
CCDC88B-202ENST00000356786 RPL36AP83881 106 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-202ENST00000356786 RPL36ALQ969Q0 106 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-202ENST00000356786 F8VRH5 84 aa15.64■□□□□ 0.09
CCDC88B-202ENST00000356786 SIVA1O15304 175 aa15.64■□□□□ 0.09
CCDC88B-202ENST00000356786 NDUFS7O75251 213 aa15.64■□□□□ 0.09
CCDC88B-202ENST00000356786 ZNF134P52741 427 aa15.64■□□□□ 0.09
CCDC88B-202ENST00000356786 PRSS22Q9GZN4 317 aa15.64■□□□□ 0.09
CCDC88B-202ENST00000356786 TRAV26-2A0A0B4J265 109 aa15.64■□□□□ 0.09
CCDC88B-202ENST00000356786 DPH3Q96FX2 82 aa15.64■□□□□ 0.09
CCDC88B-202ENST00000356786 ZNF503-AS2A6NEH8 195 aa15.63■□□□□ 0.09
CCDC88B-202ENST00000356786 PMVKQ15126 192 aa15.63■□□□□ 0.09
CCDC88B-202ENST00000356786 MORN5Q5VZ52 161 aa15.63■□□□□ 0.09
CCDC88B-202ENST00000356786 EFNA4P52798 201 aa15.63■□□□□ 0.09
CCDC88B-202ENST00000356786 IL17RELQ6ZVW7 336 aa15.63■□□□□ 0.09
CCDC88B-202ENST00000356786 LAMTOR3Q9UHA4 124 aa15.63■□□□□ 0.09
CCDC88B-202ENST00000356786 LEPROTO15243 131 aa15.63■□□□□ 0.09
CCDC88B-202ENST00000356786 PCP2Q8IVA1 136 aa15.63■□□□□ 0.09
CCDC88B-202ENST00000356786 RHPN1-AS1Q9BWJ2 59 aa15.63■□□□□ 0.09
CCDC88B-202ENST00000356786 PRO1854Q9UHT4 67 aa15.63■□□□□ 0.09
CCDC88B-202ENST00000356786 C15orf65H3BRN8 121 aa15.62■□□□□ 0.09
CCDC88B-202ENST00000356786 TAL2Q16559 108 aa15.62■□□□□ 0.09
CCDC88B-202ENST00000356786 OR11H6Q8NGC7 330 aa15.62■□□□□ 0.09
CCDC88B-202ENST00000356786 C17orf58Q2M2W7 97 aa15.62■□□□□ 0.09
CCDC88B-202ENST00000356786 C12orf74Q32Q52 190 aa15.62■□□□□ 0.09
CCDC88B-202ENST00000356786 WIPF2Q8TF74 440 aaPredicted RBP15.62■□□□□ 0.09
CCDC88B-202ENST00000356786 TEX48A0A1B0GUV7 120 aa15.62■□□□□ 0.09
CCDC88B-202ENST00000356786 SAP30O75446 220 aa15.62■□□□□ 0.09
CCDC88B-202ENST00000356786 KLF5Q13887 457 aaPredicted RBP15.62■□□□□ 0.09
CCDC88B-202ENST00000356786 PROK2Q9HC23 129 aa15.62■□□□□ 0.09
CCDC88B-202ENST00000356786 PHLDA1Q8WV24 401 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-202ENST00000356786 CITED1Q99966 193 aa15.61■□□□□ 0.09
CCDC88B-202ENST00000356786 IFITM1P13164 125 aa15.61■□□□□ 0.09
CCDC88B-202ENST00000356786 DUX4L9Q6RFH8 374 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-202ENST00000356786 MBD3L4A6NDZ8 208 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-202ENST00000356786 MBD3L3A6NE82 208 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-202ENST00000356786 MBD3L5A6NJ08 208 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-202ENST00000356786 DTX2Q86UW9 622 aa15.61■□□□□ 0.09
CCDC88B-202ENST00000356786 MBD3L2Q8NHZ7 208 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-202ENST00000356786 NDUFB8O95169 186 aa15.61■□□□□ 0.09
CCDC88B-202ENST00000356786 TTC28Q96AY4 2481 aa15.6■□□□□ 0.09
CCDC88B-202ENST00000356786 HLA-DRB4P13762 266 aa15.6■□□□□ 0.09
CCDC88B-202ENST00000356786 HLA-DRB4X5D2U9 266 aa15.6■□□□□ 0.09
CCDC88B-202ENST00000356786 TRGV1A0A0A0MS02 117 aa15.6■□□□□ 0.09
CCDC88B-202ENST00000356786 LY6HO94772 140 aa15.6■□□□□ 0.09
CCDC88B-202ENST00000356786 C6orf226Q5I0X4 101 aa15.6■□□□□ 0.09
CCDC88B-202ENST00000356786 SMIM2Q9BVW6 85 aa15.6■□□□□ 0.09
CCDC88B-202ENST00000356786 TMEM14CQ9P0S9 112 aa15.6■□□□□ 0.09
CCDC88B-202ENST00000356786 FAM120AOSQ5T036 256 aa15.59■□□□□ 0.09
CCDC88B-202ENST00000356786 ZNF833PQ6ZTB9 187 aa15.59■□□□□ 0.09
CCDC88B-202ENST00000356786 IGHG3P01860 377 aa15.59■□□□□ 0.09
CCDC88B-202ENST00000356786 ZNF415Q09FC8 603 aa15.59■□□□□ 0.09
CCDC88B-202ENST00000356786 TPSG1Q9NRR2 321 aa15.59■□□□□ 0.09
CCDC88B-202ENST00000356786 PLXND1Q9Y4D7 1925 aa15.59■□□□□ 0.09
CCDC88B-202ENST00000356786 M0R1W7 72 aa15.59■□□□□ 0.09
CCDC88B-202ENST00000356786 IGHV3-53P01767 116 aa15.59■□□□□ 0.09
CCDC88B-202ENST00000356786 Q8NFD4 153 aa15.59■□□□□ 0.09
CCDC88B-202ENST00000356786 DKK1O94907 266 aa15.58■□□□□ 0.09
CCDC88B-202ENST00000356786 LYPD6Q86Y78 171 aa15.58■□□□□ 0.09
CCDC88B-202ENST00000356786 OVOL2Q9BRP0 275 aa15.58■□□□□ 0.09
CCDC88B-202ENST00000356786 PCNX2A6NKB5 2137 aa15.58■□□□□ 0.09
CCDC88B-202ENST00000356786 GTF3C1Q12789 2109 aa15.58■□□□□ 0.09
CCDC88B-202ENST00000356786 SDHAF1A6NFY7 115 aa15.58■□□□□ 0.09
CCDC88B-202ENST00000356786 LINC00173Q6ZV60 143 aa15.58■□□□□ 0.09
CCDC88B-202ENST00000356786 SH2D6Q7Z4S9 175 aa15.58■□□□□ 0.09
CCDC88B-202ENST00000356786 TMEM141Q96I45 108 aa15.58■□□□□ 0.09
CCDC88B-202ENST00000356786 TRPT1Q86TN4 253 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-202ENST00000356786 PLXNA2O75051 1894 aa15.58■□□□□ 0.08
CCDC88B-202ENST00000356786 INAFM2P0DMQ5 153 aa15.58■□□□□ 0.08
CCDC88B-202ENST00000356786 C1QTNF4Q9BXJ3 329 aa15.58■□□□□ 0.08
CCDC88B-202ENST00000356786 COL8A2P25067 703 aa15.57■□□□□ 0.08
CCDC88B-202ENST00000356786 BRD3OSQ6XYD6 125 aa15.57■□□□□ 0.08
CCDC88B-202ENST00000356786 H3BUX3 64 aa15.57■□□□□ 0.08
CCDC88B-202ENST00000356786 DNAJC30Q96LL9 226 aa15.57■□□□□ 0.08
CCDC88B-202ENST00000356786 DYSFO75923 2080 aa15.57■□□□□ 0.08
CCDC88B-202ENST00000356786 GAGE12JA6NER3 117 aa15.57■□□□□ 0.08
CCDC88B-202ENST00000356786 OVOL3O00110 214 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms