RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 LINC00477Q96M19 166 aa16.14■□□□□ 0.17
SHMT1-203ENST00000354098 C1QTNF4Q9BXJ3 329 aa16.14■□□□□ 0.17
SHMT1-203ENST00000354098 TRAV12-2A0A075B6T6 113 aa16.13■□□□□ 0.17
SHMT1-203ENST00000354098 RBAKDNA6NC62 111 aa16.13■□□□□ 0.17
SHMT1-203ENST00000354098 CRXO43186 299 aaPredicted RBP16.13■□□□□ 0.17
SHMT1-203ENST00000354098 HBE1P02100 147 aa16.13■□□□□ 0.17
SHMT1-203ENST00000354098 TCRAP04437 139 aa16.13■□□□□ 0.17
SHMT1-203ENST00000354098 ATP5G3P48201 142 aa16.13■□□□□ 0.17
SHMT1-203ENST00000354098 ARL6IP6Q8N6S5 226 aa16.13■□□□□ 0.17
SHMT1-203ENST00000354098 Q8TAT8 98 aa16.13■□□□□ 0.17
SHMT1-203ENST00000354098 HUWE1Q7Z6Z7 4374 aaKnown RBP16.12■□□□□ 0.17
SHMT1-203ENST00000354098 TEX46H3BTG2 121 aa16.12■□□□□ 0.17
SHMT1-203ENST00000354098 TMEM78Q5T7P6 136 aa16.12■□□□□ 0.17
SHMT1-203ENST00000354098 CCDC28AQ8IWP9 274 aa16.12■□□□□ 0.17
SHMT1-203ENST00000354098 ZNF680Q8NEM1 530 aa16.12■□□□□ 0.17
SHMT1-203ENST00000354098 GNG13Q9P2W3 67 aa16.12■□□□□ 0.17
SHMT1-203ENST00000354098 TP53TG1Q9Y2A0 90 aa16.12■□□□□ 0.17
SHMT1-203ENST00000354098 TRAV8-1A0A0A6YYK1 113 aa16.11■□□□□ 0.17
SHMT1-203ENST00000354098 IFNA7P01567 189 aa16.11■□□□□ 0.17
SHMT1-203ENST00000354098 BLOC1S1P78537 153 aa16.11■□□□□ 0.17
SHMT1-203ENST00000354098 SGK494Q96LW2 274 aa16.11■□□□□ 0.17
SHMT1-203ENST00000354098 NKX6-2Q9C056 277 aaPredicted RBP16.11■□□□□ 0.17
SHMT1-203ENST00000354098 ZNF492Q9P255 531 aa16.11■□□□□ 0.17
SHMT1-203ENST00000354098 J3KRW8 73 aa16.11■□□□□ 0.17
SHMT1-203ENST00000354098 CDKN1BP46527 198 aa16.11■□□□□ 0.17
SHMT1-203ENST00000354098 FAM19A4Q96LR4 140 aa16.11■□□□□ 0.17
SHMT1-203ENST00000354098 ARL2-SNX15V9GYD0 113 aa16.11■□□□□ 0.17
SHMT1-203ENST00000354098 PPT1P50897 306 aa16.1■□□□□ 0.17
SHMT1-203ENST00000354098 ZNF138P52744 262 aa16.1■□□□□ 0.17
SHMT1-203ENST00000354098 ODF3Q96PU9 254 aa16.1■□□□□ 0.17
SHMT1-203ENST00000354098 OR11H2Q8NH07 326 aa16.09■□□□□ 0.17
SHMT1-203ENST00000354098 PCNPQ8WW12 178 aaKnown RBP16.09■□□□□ 0.17
SHMT1-203ENST00000354098 IGF2BP2-AS1Q96M15 143 aa16.09■□□□□ 0.17
SHMT1-203ENST00000354098 LINC00479Q96M42 142 aa16.09■□□□□ 0.17
SHMT1-203ENST00000354098 ATG101Q9BSB4 218 aa16.09■□□□□ 0.17
SHMT1-203ENST00000354098 U3KQK5 164 aa16.09■□□□□ 0.17
SHMT1-203ENST00000354098 AMBPP02760 352 aa16.08■□□□□ 0.17
SHMT1-203ENST00000354098 RBMY1A1P0DJD3 496 aaKnown RBP16.08■□□□□ 0.17
SHMT1-203ENST00000354098 RBMY1CP0DJD4 496 aa16.08■□□□□ 0.17
SHMT1-203ENST00000354098 RBMY1FQ15415 496 aaKnown RBP16.08■□□□□ 0.17
SHMT1-203ENST00000354098 C1orf158Q8N1D5 194 aa16.08■□□□□ 0.17
SHMT1-203ENST00000354098 RARRES2Q99969 163 aa16.08■□□□□ 0.17
SHMT1-203ENST00000354098 MANBALQ9NQG1 85 aa16.08■□□□□ 0.17
SHMT1-203ENST00000354098 IGHV3OR16-12A0A075B7B8 117 aa16.08■□□□□ 0.16
SHMT1-203ENST00000354098 TSPOP30536 169 aa16.08■□□□□ 0.16
SHMT1-203ENST00000354098 LEPP41159 167 aa16.08■□□□□ 0.16
SHMT1-203ENST00000354098 CYB561D1Q8N8Q1 229 aa16.08■□□□□ 0.16
SHMT1-203ENST00000354098 LYPD6BQ8NI32 183 aa16.08■□□□□ 0.16
SHMT1-203ENST00000354098 PEX7O00628 323 aa16.07■□□□□ 0.16
SHMT1-203ENST00000354098 IGLV2-11P01706 119 aa16.07■□□□□ 0.16
SHMT1-203ENST00000354098 GFI1BQ5VTD9 330 aa16.07■□□□□ 0.16
SHMT1-203ENST00000354098 TRAV34A0A0B4J273 112 aa16.06■□□□□ 0.16
SHMT1-203ENST00000354098 SERTM2A0A1B0GWG4 89 aa16.06■□□□□ 0.16
SHMT1-203ENST00000354098 C11orf94C9JXX5 98 aa16.06■□□□□ 0.16
SHMT1-203ENST00000354098 INSP01308 110 aa16.06■□□□□ 0.16
SHMT1-203ENST00000354098 CRISP2P16562 243 aa16.06■□□□□ 0.16
SHMT1-203ENST00000354098 ZNF705AQ6ZN79 300 aaPredicted RBP16.06■□□□□ 0.16
SHMT1-203ENST00000354098 ZFAND2AQ8N6M9 145 aa16.06■□□□□ 0.16
SHMT1-203ENST00000354098 TVP23CQ96ET8 276 aa16.06■□□□□ 0.16
SHMT1-203ENST00000354098 X6R8D5 127 aa16.06■□□□□ 0.16
SHMT1-203ENST00000354098 K7EQM0 130 aa16.05■□□□□ 0.16
SHMT1-203ENST00000354098 PMS2P11Q13670 270 aa16.05■□□□□ 0.16
SHMT1-203ENST00000354098 PRR9Q5T870 116 aa16.05■□□□□ 0.16
SHMT1-203ENST00000354098 HIST1H2BAQ96A08 127 aa16.05■□□□□ 0.16
SHMT1-203ENST00000354098 KLLNB2CW77 178 aa16.05■□□□□ 0.16
SHMT1-203ENST00000354098 PSG8Q9UQ74 426 aa16.05■□□□□ 0.16
SHMT1-203ENST00000354098 GPX1P07203 203 aa16.04■□□□□ 0.16
SHMT1-203ENST00000354098 RNASE4P34096 147 aaKnown RBP16.04■□□□□ 0.16
SHMT1-203ENST00000354098 BTN1A1Q13410 526 aa16.04■□□□□ 0.16
SHMT1-203ENST00000354098 TMEM75Q8N9X5 138 aa16.04■□□□□ 0.16
SHMT1-203ENST00000354098 GOLT1BQ9Y3E0 138 aa16.04■□□□□ 0.16
SHMT1-203ENST00000354098 TRAV12-3A0A0B4J271 114 aa16.03■□□□□ 0.16
SHMT1-203ENST00000354098 SCO2A0A1W2PP80 73 aa16.03■□□□□ 0.16
SHMT1-203ENST00000354098 PRM2P04554 102 aa16.03■□□□□ 0.16
SHMT1-203ENST00000354098 BCL2P10415 239 aa16.03■□□□□ 0.16
SHMT1-203ENST00000354098 FLI1Q01543 452 aaPredicted RBP16.03■□□□□ 0.16
SHMT1-203ENST00000354098 Q6ZQT7 251 aa16.03■□□□□ 0.16
SHMT1-203ENST00000354098 PRNTQ86SH4 94 aa16.03■□□□□ 0.16
SHMT1-203ENST00000354098 TCEAL7Q9BRU2 100 aa16.03■□□□□ 0.16
SHMT1-203ENST00000354098 TMEM208Q9BTX3 173 aa16.03■□□□□ 0.16
SHMT1-203ENST00000354098 TRBV7-9A0A0J9YWB2 115 aa16.02■□□□□ 0.16
SHMT1-203ENST00000354098 F6UZH7 168 aa16.02■□□□□ 0.16
SHMT1-203ENST00000354098 IFNA1P01562 189 aa16.02■□□□□ 0.16
SHMT1-203ENST00000354098 LENEPQ9Y5L5 61 aa16.02■□□□□ 0.16
SHMT1-203ENST00000354098 C7orf71A4D174 169 aa16.02■□□□□ 0.15
SHMT1-203ENST00000354098 NMBP08949 121 aa16.02■□□□□ 0.15
SHMT1-203ENST00000354098 DEFB4AO15263 64 aa16.01■□□□□ 0.15
SHMT1-203ENST00000354098 MEF2BQ02080 365 aaPredicted RBP16.01■□□□□ 0.15
SHMT1-203ENST00000354098 LINC01587Q99440 93 aa16.01■□□□□ 0.15
SHMT1-203ENST00000354098 TREM1Q9NP99 234 aa16.01■□□□□ 0.15
SHMT1-203ENST00000354098 VAX2Q9UIW0 290 aa16.01■□□□□ 0.15
SHMT1-203ENST00000354098 STAB2Q8WWQ8 2551 aa16.01■□□□□ 0.15
SHMT1-203ENST00000354098 LOC102723971A0A1B0GUV8 181 aa16■□□□□ 0.15
SHMT1-203ENST00000354098 ZNF324O75467 553 aaPredicted RBP16■□□□□ 0.15
SHMT1-203ENST00000354098 IFITM2Q01629 132 aa16■□□□□ 0.15
SHMT1-203ENST00000354098 Q8NAQ8 132 aa16■□□□□ 0.15
SHMT1-203ENST00000354098 C2CD4CQ8TF44 421 aa16■□□□□ 0.15
SHMT1-203ENST00000354098 C8orf49Q96NF6 230 aa16■□□□□ 0.15
SHMT1-203ENST00000354098 KLF12Q9Y4X4 402 aa16■□□□□ 0.15
SHMT1-203ENST00000354098 IGHV4-28A0A0C4DH34 117 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms