RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 C2orf82Q6UX34 121 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 DNAJC30Q96LL9 226 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 C20orf144Q9BQM9 153 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 A0A1B0GWJ7 208 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 IGHV1-8P0DP01 117 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 PAX8Q06710 450 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 RALGAPA2Q2PPJ7 1873 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 IGHV1-3A0A0C4DH29 117 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 A0A1W2PPI3 338 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 CLPSL1A2RUU4 121 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 RSPO1Q2MKA7 263 aaPredicted RBP7.03□□□□□ -1.28
RTN3-202ENST00000339997 MORN5Q5VZ52 161 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 PEMTQ9UBM1 199 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 PLXND1Q9Y4D7 1925 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 H0YJW9 148 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 TMEM258P61165 79 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 UBE2E2Q96LR5 201 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 PLA2G2EQ9NZK7 142 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 K7EP13 123 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 LY6DQ14210 128 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 DIAPH2-AS1Q14236 149 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 STHQ8IWL8 128 aa7.03□□□□□ -1.28
RTN3-202ENST00000339997 MMP23AO75900 390 aa7.02□□□□□ -1.28
RTN3-202ENST00000339997 TNFRSF6BO95407 300 aa7.02□□□□□ -1.28
RTN3-202ENST00000339997 FRMD6-AS1P0C7T7 363 aa7.02□□□□□ -1.28
RTN3-202ENST00000339997 EFNA4P52798 201 aa7.02□□□□□ -1.28
RTN3-202ENST00000339997 SPACA3Q8IXA5 215 aa7.02□□□□□ -1.28
RTN3-202ENST00000339997 LINC01549A6NIU2 74 aa7.02□□□□□ -1.29
RTN3-202ENST00000339997 KALRNO60229 2985 aa7.02□□□□□ -1.29
RTN3-202ENST00000339997 ZNF672Q499Z4 452 aaPredicted RBP7.02□□□□□ -1.29
RTN3-202ENST00000339997 SIGLEC15Q6ZMC9 328 aa7.02□□□□□ -1.29
RTN3-202ENST00000339997 DLX4Q92988 240 aaPredicted RBP7.02□□□□□ -1.29
RTN3-202ENST00000339997 CCL19Q99731 98 aa7.02□□□□□ -1.29
RTN3-202ENST00000339997 TPSG1Q9NRR2 321 aa7.02□□□□□ -1.29
RTN3-202ENST00000339997 EML6Q6ZMW3 1958 aa7.02□□□□□ -1.29
RTN3-202ENST00000339997 FAM57AQ8TBR7 257 aa7.02□□□□□ -1.29
RTN3-202ENST00000339997 TTTY13Q9BZ97 58 aa7.02□□□□□ -1.29
RTN3-202ENST00000339997 ADARB2-AS1A8MUL3 147 aa7.02□□□□□ -1.29
RTN3-202ENST00000339997 DKK1O94907 266 aa7.02□□□□□ -1.29
RTN3-202ENST00000339997 SLC25A16P16260 332 aa7.02□□□□□ -1.29
RTN3-202ENST00000339997 ZFP36L1Q07352 338 aaKnown RBP7.02□□□□□ -1.29
RTN3-202ENST00000339997 TMEM30BQ3MIR4 351 aa7.02□□□□□ -1.29
RTN3-202ENST00000339997 TMEM167AQ8TBQ9 72 aa7.02□□□□□ -1.29
RTN3-202ENST00000339997 NEU4Q8WWR8 484 aaPredicted RBP7.02□□□□□ -1.29
RTN3-202ENST00000339997 IGLV3-19P01714 112 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 SLC50A1Q9BRV3 221 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 MRPL27Q9P0M9 148 aaKnown RBP7.01□□□□□ -1.29
RTN3-202ENST00000339997 SIGLEC9Q9Y336 463 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 V9GYV3 84 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 IGHV1-24A0A0C4DH33 117 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 ZNF134P52741 427 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 LINC00173Q6ZV60 143 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 CSMD2Q7Z408 3487 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 HIVEP2P31629 2446 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 IGF2RP11717 2491 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 COL4A6Q14031 1691 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 SAP30O75446 220 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 Q0VG73 95 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 RNASE13Q5GAN3 156 aaKnown RBP7.01□□□□□ -1.29
RTN3-202ENST00000339997 HELZP42694 1942 aaKnown RBP7.01□□□□□ -1.29
RTN3-202ENST00000339997 MED12LQ86YW9 2145 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 IGHV3-16A0A0C4DH30 117 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 Q86TA4 180 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 DKK2Q9UBU2 259 aa7.01□□□□□ -1.29
RTN3-202ENST00000339997 AKAP9Q99996 3911 aa7□□□□□ -1.29
RTN3-202ENST00000339997 COL8A2P25067 703 aa7□□□□□ -1.29
RTN3-202ENST00000339997 B3GALT5-AS1P59052 145 aa7□□□□□ -1.29
RTN3-202ENST00000339997 MAPK1IP1LQ8NDC0 245 aa7□□□□□ -1.29
RTN3-202ENST00000339997 RNASE8Q8TDE3 154 aaKnown RBP7□□□□□ -1.29
RTN3-202ENST00000339997 TNFRSF14Q92956 283 aa7□□□□□ -1.29
RTN3-202ENST00000339997 TCTEX1D4Q5JR98 221 aa7□□□□□ -1.29
RTN3-202ENST00000339997 SH2D6Q7Z4S9 175 aa7□□□□□ -1.29
RTN3-202ENST00000339997 WDR86Q86TI4 376 aa7□□□□□ -1.29
RTN3-202ENST00000339997 C17orf77Q96MU5 243 aa7□□□□□ -1.29
RTN3-202ENST00000339997 TRBV20-1A0A075B6N2 111 aa7□□□□□ -1.29
RTN3-202ENST00000339997 G3V318 75 aa7□□□□□ -1.29
RTN3-202ENST00000339997 CGB3P0DN86 165 aa7□□□□□ -1.29
RTN3-202ENST00000339997 SSBP2P81877 361 aaPredicted RBP7□□□□□ -1.29
RTN3-202ENST00000339997 GAGE2AQ6NT46 116 aa7□□□□□ -1.29
RTN3-202ENST00000339997 PCP2Q8IVA1 136 aa7□□□□□ -1.29
RTN3-202ENST00000339997 PRRC2CQ9Y520 2896 aaKnown RBP7□□□□□ -1.29
RTN3-202ENST00000339997 TECTAO75443 2155 aa7□□□□□ -1.29
RTN3-202ENST00000339997 ATG2AQ2TAZ0 1938 aa7□□□□□ -1.29
RTN3-202ENST00000339997 PKD1L2Q7Z442 2459 aa7□□□□□ -1.29
RTN3-202ENST00000339997 K7EN84 100 aa7□□□□□ -1.29
RTN3-202ENST00000339997 SYNJ2BPP57105 145 aa7□□□□□ -1.29
RTN3-202ENST00000339997 C6orf226Q5I0X4 101 aa7□□□□□ -1.29
RTN3-202ENST00000339997 C10orf91Q5T1B1 145 aa7□□□□□ -1.29
RTN3-202ENST00000339997 GAFA1Q96PS6 74 aa7□□□□□ -1.29
RTN3-202ENST00000339997 MRPL35Q9NZE8 188 aaKnown RBP7□□□□□ -1.29
RTN3-202ENST00000339997 FN1P02751 2386 aaKnown RBP6.99□□□□□ -1.29
RTN3-202ENST00000339997 DUSP14O95147 198 aaKnown RBP6.99□□□□□ -1.29
RTN3-202ENST00000339997 CMC4P56277 68 aaPredicted RBP6.99□□□□□ -1.29
RTN3-202ENST00000339997 BVES-AS1Q5T3Y7 98 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 NCOA6Q14686 2063 aaPredicted RBP6.99□□□□□ -1.29
RTN3-202ENST00000339997 ZFYVE26Q68DK2 2539 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 TRGV1A0A0A0MS02 117 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 TMEM178BH3BS89 294 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 HLA-DMBP28068 263 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 VDAC2P45880 294 aaPredicted RBP6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 169.5 ms