RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 C16orf92Q96LL3 132 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 C8orf49Q96NF6 230 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 SLC50A1Q9BRV3 221 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 MLST8Q9BVC4 326 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 CTDSP1Q9GZU7 261 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 NRN1Q9NPD7 142 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 TMEM242Q9NWH2 141 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 MLXQ9UH92 298 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 PSG8Q9UQ74 426 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 V9GYV3 84 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 JMJD1CQ15652 2540 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 CXorf65A6NEN9 183 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 ADARB2-AS1A8MUL3 147 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 FOLR2P14207 255 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 TMEM75Q8N9X5 138 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 ZC2HC1AQ96GY0 325 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 GPR61Q9BZJ8 451 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 TEP1Q99973 2627 aaKnown RBP3.12□□□□□ -1.91
MCF2-201ENST00000338585 TMEM238LA0A1B0GVL6 79 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 A0A1W2PPQ1 181 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 F6UB75 175 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 K7EQM0 130 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 CCL24O00175 119 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 RAB5AP20339 215 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 CRIP1P50238 77 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 TCL1AP56279 114 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 IBA57Q5T440 356 aaKnown RBP3.12□□□□□ -1.91
MCF2-201ENST00000338585 TMEM183AQ8IXX5 376 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 ZNF738Q8NE65 137 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 NUDT10Q8NFP7 164 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 OR9G4Q8NGQ1 327 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 DCANP1Q8TF63 244 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 NUDT11Q96G61 164 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 MS4A6AQ9H2W1 248 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 PRELID1Q9Y255 219 aa3.12□□□□□ -1.91
MCF2-201ENST00000338585 TSSC4Q9Y5U2 329 aaPredicted RBP3.12□□□□□ -1.91
MCF2-201ENST00000338585 TRBV6-1A0A0K0K1D8 114 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 C19orf71A6NCJ1 209 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 PPP1R2P9O14990 202 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 S100A9P06702 114 aaKnown RBP3.11□□□□□ -1.91
MCF2-201ENST00000338585 CSN3P07498 182 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 MEOX2P50222 304 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 FHL3Q13643 280 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 NSUN5P1Q3KNT7 163 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.11□□□□□ -1.91
MCF2-201ENST00000338585 AGPAT4-IT1Q9H0P7 198 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 OSTCQ9NRP0 149 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 SORL1Q92673 2214 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 SERTM2A0A1B0GWG4 89 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 ZNF705GA8MUZ8 300 aaPredicted RBP3.11□□□□□ -1.91
MCF2-201ENST00000338585 SPINK4O60575 86 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 FRMD6-AS1P0C7T7 363 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 ZNF688P0C7X2 276 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 RPS10P46783 165 aaKnown RBP3.11□□□□□ -1.91
MCF2-201ENST00000338585 ZNF80P51504 273 aaPredicted RBP3.11□□□□□ -1.91
MCF2-201ENST00000338585 RPL19P84098 196 aaKnown RBP3.11□□□□□ -1.91
MCF2-201ENST00000338585 KRTAP5-3Q6L8H2 238 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 FAM231DQ6ZW35 169 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 ZFP82Q8N141 532 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 FAM210BQ96KR6 192 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 PRR25Q96S07 402 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 PYGO2Q9BRQ0 406 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 IL36BQ9NZH7 164 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 ZFP30Q9Y2G7 519 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 TRBV24-1A0A075B6N3 115 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 K7EQG2 157 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 M0QZ24 198 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 GATCO43716 136 aaKnown RBP3.11□□□□□ -1.91
MCF2-201ENST00000338585 GZMBP10144 247 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 S100PP25815 95 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 BMI1P35226 326 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 Q6ZQT7 251 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 TMEM61Q8N0U2 210 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 ARL6IP6Q8N6S5 226 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 WFDC12Q8WWY7 111 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 MRPL53Q96EL3 112 aaKnown RBP3.11□□□□□ -1.91
MCF2-201ENST00000338585 SMIM12Q96EX1 92 aa3.11□□□□□ -1.91
MCF2-201ENST00000338585 RBAKDNA6NC62 111 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 IZUMO1RA6ND01 250 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 J3KRW8 73 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 P01737 135 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 CD33P20138 364 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 ZNF138P52744 262 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 HIST1H1AQ02539 215 aaPredicted RBP3.1□□□□□ -1.91
MCF2-201ENST00000338585 FOXL1Q12952 345 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 PSMG4Q5JS54 123 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 GDF5OSQ5U4N7 250 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 KCNIP4Q6PIL6 250 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 RPP21Q9H633 154 aaKnown RBP3.1□□□□□ -1.91
MCF2-201ENST00000338585 ZNF492Q9P255 531 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 PEMTQ9UBM1 199 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 NIPBLQ6KC79 2804 aaeCLIP3.1□□□□□ -1.91
MCF2-201ENST00000338585 TMSB15BA0A087X1C1 80 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 SMIM27A0A1W2PRY6 76 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 NPIPB6E9PJ23 425 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 OVOL1O14753 267 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 SH2D1AO60880 128 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 TRGC2P03986 189 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 CT45A10P0DMU9 189 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 KIR3DS1Q14943 382 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms