RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 ABHD17AQ96GS6 310 aa11.52□□□□□ -0.57
CCNF-201ENST00000293968 KLK15Q9H2R5 256 aa11.52□□□□□ -0.57
CCNF-201ENST00000293968 AKAP6Q13023 2319 aa11.52□□□□□ -0.57
CCNF-201ENST00000293968 ZNF493Q6ZR52 646 aa11.51□□□□□ -0.57
CCNF-201ENST00000293968 RNF182Q8N6D2 247 aa11.51□□□□□ -0.57
CCNF-201ENST00000293968 HOXB4P17483 251 aaPredicted RBP11.51□□□□□ -0.57
CCNF-201ENST00000293968 FXYD2P54710 66 aa11.51□□□□□ -0.57
CCNF-201ENST00000293968 TMEM158Q8WZ71 300 aa11.51□□□□□ -0.57
CCNF-201ENST00000293968 ZNF207O43670 478 aaKnown RBP11.51□□□□□ -0.57
CCNF-201ENST00000293968 IGFL3Q6UXB1 125 aa11.51□□□□□ -0.57
CCNF-201ENST00000293968 IGKV2D-26A0A0A0MRZ7 120 aa11.5□□□□□ -0.57
CCNF-201ENST00000293968 SHISA9B4DS77 424 aa11.5□□□□□ -0.57
CCNF-201ENST00000293968 TNFRSF13BO14836 293 aaPredicted RBP11.5□□□□□ -0.57
CCNF-201ENST00000293968 GOSR1O95249 250 aa11.5□□□□□ -0.57
CCNF-201ENST00000293968 ECSCRQ19T08 205 aa11.5□□□□□ -0.57
CCNF-201ENST00000293968 PRR30Q53SZ7 412 aaPredicted RBP11.5□□□□□ -0.57
CCNF-201ENST00000293968 ZC2HC1BQ5TFG8 222 aa11.5□□□□□ -0.57
CCNF-201ENST00000293968 ARPC1AQ92747 370 aa11.5□□□□□ -0.57
CCNF-201ENST00000293968 TNFRSF6BO95407 300 aa11.5□□□□□ -0.57
CCNF-201ENST00000293968 PIP4P1Q86T03 277 aa11.5□□□□□ -0.57
CCNF-201ENST00000293968 CHAC1Q9BUX1 264 aa11.5□□□□□ -0.57
CCNF-201ENST00000293968 HIF1ANQ9NWT6 349 aa11.5□□□□□ -0.57
CCNF-201ENST00000293968 OVOL3O00110 214 aa11.49□□□□□ -0.57
CCNF-201ENST00000293968 SCGB2A1O75556 95 aa11.49□□□□□ -0.57
CCNF-201ENST00000293968 IGKCP01834 107 aa11.49□□□□□ -0.57
CCNF-201ENST00000293968 MTURNQ8N3F0 131 aa11.49□□□□□ -0.57
CCNF-201ENST00000293968 TRAV26-2A0A0B4J265 109 aa11.49□□□□□ -0.57
CCNF-201ENST00000293968 TRBV6-1A0A0K0K1D8 114 aa11.49□□□□□ -0.57
CCNF-201ENST00000293968 CEACAM3P40198 252 aa11.49□□□□□ -0.57
CCNF-201ENST00000293968 ADAMTSL5Q6ZMM2 481 aa11.49□□□□□ -0.57
CCNF-201ENST00000293968 B9A039 149 aa11.49□□□□□ -0.57
CCNF-201ENST00000293968 NDUFA3O95167 84 aa11.49□□□□□ -0.57
CCNF-201ENST00000293968 PDE6HQ13956 83 aa11.49□□□□□ -0.57
CCNF-201ENST00000293968 ANKHD1Q8IWZ3 2542 aaKnown RBP11.49□□□□□ -0.57
CCNF-201ENST00000293968 FABP5P3A8MUU1 101 aa11.48□□□□□ -0.57
CCNF-201ENST00000293968 TMEM238C9JI98 176 aa11.48□□□□□ -0.57
CCNF-201ENST00000293968 UFSP1Q6NVU6 142 aa11.48□□□□□ -0.57
CCNF-201ENST00000293968 OR5A1Q8NGJ0 315 aa11.48□□□□□ -0.57
CCNF-201ENST00000293968 TRAV40A0A0B4J280 105 aa11.48□□□□□ -0.57
CCNF-201ENST00000293968 C5orf64Q2M2E5 130 aa11.48□□□□□ -0.57
CCNF-201ENST00000293968 DMXL1Q9Y485 3027 aa11.48□□□□□ -0.57
CCNF-201ENST00000293968 WI2-2373I1.2A0A1W2PRP0 233 aa11.48□□□□□ -0.57
CCNF-201ENST00000293968 SCGB2A2Q13296 93 aa11.48□□□□□ -0.57
CCNF-201ENST00000293968 MYOZ3Q8TDC0 251 aa11.48□□□□□ -0.57
CCNF-201ENST00000293968 TMEM8BA6NDV4 472 aa11.47□□□□□ -0.57
CCNF-201ENST00000293968 IL17RELQ6ZVW7 336 aa11.47□□□□□ -0.57
CCNF-201ENST00000293968 PRAC2D3DTV9 90 aa11.47□□□□□ -0.57
CCNF-201ENST00000293968 LCNL1Q6ZST4 164 aa11.47□□□□□ -0.57
CCNF-201ENST00000293968 DYNAPQ8N1N2 210 aa11.47□□□□□ -0.57
CCNF-201ENST00000293968 NPFFR1Q9GZQ6 430 aa11.47□□□□□ -0.57
CCNF-201ENST00000293968 G3V4G9 280 aa11.47□□□□□ -0.57
CCNF-201ENST00000293968 MRPS12O15235 138 aaKnown RBP11.47□□□□□ -0.57
CCNF-201ENST00000293968 ZNF672Q499Z4 452 aaPredicted RBP11.47□□□□□ -0.57
CCNF-201ENST00000293968 DPF1Q92782 380 aa11.47□□□□□ -0.57
CCNF-201ENST00000293968 GTSF1LQ9H1H1 148 aa11.47□□□□□ -0.57
CCNF-201ENST00000293968 U3KQK5 164 aa11.47□□□□□ -0.57
CCNF-201ENST00000293968 HIST1H4GQ99525 98 aa11.46□□□□□ -0.57
CCNF-201ENST00000293968 ATMQ13315 3056 aa11.46□□□□□ -0.57
CCNF-201ENST00000293968 DPM2O94777 84 aa11.46□□□□□ -0.57
CCNF-201ENST00000293968 NDPQ00604 133 aa11.46□□□□□ -0.57
CCNF-201ENST00000293968 SPANXN1Q5VSR9 72 aa11.46□□□□□ -0.57
CCNF-201ENST00000293968 FANCD2OSQ96PS1 177 aa11.46□□□□□ -0.57
CCNF-201ENST00000293968 TLN1Q9Y490 2541 aaKnown RBP11.46□□□□□ -0.57
CCNF-201ENST00000293968 ZZEF1O43149 2961 aa11.46□□□□□ -0.58
CCNF-201ENST00000293968 TEX48A0A1B0GUV7 120 aa11.46□□□□□ -0.58
CCNF-201ENST00000293968 SMIM17P0DL12 118 aa11.46□□□□□ -0.58
CCNF-201ENST00000293968 NXT2Q9NPJ8 142 aaKnown RBP11.46□□□□□ -0.58
CCNF-201ENST00000293968 SPRY2O43597 315 aa11.45□□□□□ -0.58
CCNF-201ENST00000293968 DTX2Q86UW9 622 aa11.45□□□□□ -0.58
CCNF-201ENST00000293968 TIMD4Q96H15 378 aa11.45□□□□□ -0.58
CCNF-201ENST00000293968 SIVA1O15304 175 aa11.45□□□□□ -0.58
CCNF-201ENST00000293968 SMAGPQ0VAQ4 97 aa11.45□□□□□ -0.58
CCNF-201ENST00000293968 ODF1Q14990 250 aa11.45□□□□□ -0.58
CCNF-201ENST00000293968 RNF5Q99942 180 aa11.45□□□□□ -0.58
CCNF-201ENST00000293968 MRPL35Q9NZE8 188 aaKnown RBP11.45□□□□□ -0.58
CCNF-201ENST00000293968 GATD1Q8NB37 220 aa11.45□□□□□ -0.58
CCNF-201ENST00000293968 DEFB104AQ8WTQ1 72 aa11.45□□□□□ -0.58
CCNF-201ENST00000293968 TRBV25-1A0A075B6N4 114 aa11.44□□□□□ -0.58
CCNF-201ENST00000293968 SFTA2Q6UW10 78 aa11.44□□□□□ -0.58
CCNF-201ENST00000293968 TRGV3P03979 118 aa11.44□□□□□ -0.58
CCNF-201ENST00000293968 EFNA4P52798 201 aa11.44□□□□□ -0.58
CCNF-201ENST00000293968 AMTNQ6UX39 209 aa11.44□□□□□ -0.58
CCNF-201ENST00000293968 IGLV11-55A0A075B6I3 123 aa11.44□□□□□ -0.58
CCNF-201ENST00000293968 SAMD13Q5VXD3 122 aa11.44□□□□□ -0.58
CCNF-201ENST00000293968 CUL9Q8IWT3 2517 aa11.43□□□□□ -0.58
CCNF-201ENST00000293968 CLEC3BP05452 202 aa11.43□□□□□ -0.58
CCNF-201ENST00000293968 CFHR4Q92496 578 aa11.43□□□□□ -0.58
CCNF-201ENST00000293968 RNF185Q96GF1 192 aa11.43□□□□□ -0.58
CCNF-201ENST00000293968 GRNP28799 593 aaKnown RBP11.43□□□□□ -0.58
CCNF-201ENST00000293968 SRSF8Q9BRL6 282 aaKnown RBP11.43□□□□□ -0.58
CCNF-201ENST00000293968 C15orf32Q32M92 178 aa11.42□□□□□ -0.58
CCNF-201ENST00000293968 TMEM78Q5T7P6 136 aa11.42□□□□□ -0.58
CCNF-201ENST00000293968 CLEC19AQ6UXS0 136 aa11.42□□□□□ -0.58
CCNF-201ENST00000293968 ZNF479Q96JC4 524 aa11.42□□□□□ -0.58
CCNF-201ENST00000293968 CTSGP08311 255 aa11.42□□□□□ -0.58
CCNF-201ENST00000293968 ZNF562Q6V9R5 426 aa11.42□□□□□ -0.58
CCNF-201ENST00000293968 SMAD5-AS1Q9Y6J3 95 aa11.42□□□□□ -0.58
CCNF-201ENST00000293968 IGLC6P0CF74 106 aa11.42□□□□□ -0.58
CCNF-201ENST00000293968 CEP295Q9C0D2 2601 aa11.41□□□□□ -0.58
CCNF-201ENST00000293968 IGKV3-7A0A075B6H7 116 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms