RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ATP5J2P56134 94 aa15.46■□□□□ 0.07
VPS53-201ENST00000291074 TMEM70Q9BUB7 260 aa15.46■□□□□ 0.07
VPS53-201ENST00000291074 ATP5G2Q06055 141 aa15.46■□□□□ 0.07
VPS53-201ENST00000291074 ARL6IP6Q8N6S5 226 aa15.46■□□□□ 0.07
VPS53-201ENST00000291074 A0A087X0K7 114 aa15.45■□□□□ 0.06
VPS53-201ENST00000291074 TRBV7-1A0A0A6YYK4 115 aa15.45■□□□□ 0.06
VPS53-201ENST00000291074 LEPROTL1O95214 131 aa15.45■□□□□ 0.06
VPS53-201ENST00000291074 S100A7P31151 101 aa15.45■□□□□ 0.06
VPS53-201ENST00000291074 TCF21O43680 179 aa15.45■□□□□ 0.06
VPS53-201ENST00000291074 ANKRD39Q53RE8 183 aa15.45■□□□□ 0.06
VPS53-201ENST00000291074 C19orf54Q5BKX5 351 aa15.45■□□□□ 0.06
VPS53-201ENST00000291074 ZNF575Q86XF7 245 aa15.45■□□□□ 0.06
VPS53-201ENST00000291074 AMN1Q8IY45 258 aa15.45■□□□□ 0.06
VPS53-201ENST00000291074 A0A1B0GW15 77 aa15.44■□□□□ 0.06
VPS53-201ENST00000291074 CLEC2AQ6UVW9 174 aa15.44■□□□□ 0.06
VPS53-201ENST00000291074 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.44■□□□□ 0.069e-6■■□□□ 12.8
VPS53-201ENST00000291074 TRGV3P03979 118 aa15.44■□□□□ 0.06
VPS53-201ENST00000291074 METTL26Q96S19 204 aa15.44■□□□□ 0.06
VPS53-201ENST00000291074 GAGE1Q13065 139 aa15.43■□□□□ 0.06
VPS53-201ENST00000291074 ZNF493Q6ZR52 646 aa15.43■□□□□ 0.06
VPS53-201ENST00000291074 IL17RELQ6ZVW7 336 aa15.43■□□□□ 0.06
VPS53-201ENST00000291074 NRGNQ92686 78 aa15.43■□□□□ 0.06
VPS53-201ENST00000291074 MCRIP2Q9BUT9 160 aaKnown RBP15.43■□□□□ 0.06
VPS53-201ENST00000291074 D6R8Y8 96 aa15.43■□□□□ 0.06
VPS53-201ENST00000291074 RAB9AP51151 201 aa15.43■□□□□ 0.06
VPS53-201ENST00000291074 UQCR10Q9UDW1 63 aa15.43■□□□□ 0.06
VPS53-201ENST00000291074 ZFYVE26Q68DK2 2539 aa15.43■□□□□ 0.06
VPS53-201ENST00000291074 TRAV8-2A0A0B4J237 113 aa15.42■□□□□ 0.06
VPS53-201ENST00000291074 SYS1-DBNDD2H3BUS1 97 aa15.42■□□□□ 0.06
VPS53-201ENST00000291074 TRBV12-3P01733 135 aa15.42■□□□□ 0.06
VPS53-201ENST00000291074 ORM1P02763 201 aa15.42■□□□□ 0.06
VPS53-201ENST00000291074 FBLL1A6NHQ2 334 aaKnown RBP15.42■□□□□ 0.06
VPS53-201ENST00000291074 FER1L6-AS1Q8NA97 138 aa15.42■□□□□ 0.06
VPS53-201ENST00000291074 CSPG4Q6UVK1 2322 aa15.42■□□□□ 0.06
VPS53-201ENST00000291074 TRAV9-2A0A087WT02 112 aa15.41■□□□□ 0.06
VPS53-201ENST00000291074 H3BUX3 64 aa15.41■□□□□ 0.06
VPS53-201ENST00000291074 IGLL1P15814 213 aa15.41■□□□□ 0.06
VPS53-201ENST00000291074 BMI1P35226 326 aa15.41■□□□□ 0.06
VPS53-201ENST00000291074 FAM106AQ4KMX7 169 aa15.41■□□□□ 0.06
VPS53-201ENST00000291074 Q6ZN92 141 aa15.41■□□□□ 0.06
VPS53-201ENST00000291074 H0Y8G0 127 aa15.41■□□□□ 0.06
VPS53-201ENST00000291074 C8orf86Q6ZUL3 223 aa15.41■□□□□ 0.06
VPS53-201ENST00000291074 SLC50A1Q9BRV3 221 aa15.41■□□□□ 0.06
VPS53-201ENST00000291074 MEGF9Q9H1U4 602 aa15.41■□□□□ 0.06
VPS53-201ENST00000291074 LOC389332A0A1B0GUA5 103 aa15.4■□□□□ 0.06
VPS53-201ENST00000291074 FAM104BQ5XKR9 115 aa15.4■□□□□ 0.06
VPS53-201ENST00000291074 OR4C46A6NHA9 309 aa15.4■□□□□ 0.06
VPS53-201ENST00000291074 IGLC6P0CF74 106 aa15.4■□□□□ 0.06
VPS53-201ENST00000291074 TWIST1Q15672 202 aa15.4■□□□□ 0.06
VPS53-201ENST00000291074 Q6ZS46 218 aa15.4■□□□□ 0.06
VPS53-201ENST00000291074 AP5S1Q9NUS5 200 aa15.4■□□□□ 0.06
VPS53-201ENST00000291074 MSRB1Q9NZV6 116 aa15.4■□□□□ 0.06
VPS53-201ENST00000291074 CRXO43186 299 aaPredicted RBP15.4■□□□□ 0.06
VPS53-201ENST00000291074 IFI27P40305 119 aaPredicted RBP15.4■□□□□ 0.06
VPS53-201ENST00000291074 PRSS3P2Q8NHM4 247 aa15.4■□□□□ 0.06
VPS53-201ENST00000291074 PSMG3-AS1Q96PY0 264 aa15.4■□□□□ 0.06
VPS53-201ENST00000291074 AGPAT4-IT1Q9H0P7 198 aa15.4■□□□□ 0.06
VPS53-201ENST00000291074 U3KQE9 123 aa15.4■□□□□ 0.06
VPS53-201ENST00000291074 SMKR1H3BMG3 65 aa15.39■□□□□ 0.05
VPS53-201ENST00000291074 M0QZK8 103 aa15.39■□□□□ 0.05
VPS53-201ENST00000291074 NDUFS8O00217 210 aa15.39■□□□□ 0.05
VPS53-201ENST00000291074 ARL3P36405 182 aa15.39■□□□□ 0.05
VPS53-201ENST00000291074 LOXL1Q08397 574 aaPredicted RBP15.39■□□□□ 0.05
VPS53-201ENST00000291074 MRPL51Q4U2R6 128 aaKnown RBP15.39■□□□□ 0.05
VPS53-201ENST00000291074 UNQ9165/PRO28630Q6UXU0 137 aa15.39■□□□□ 0.05
VPS53-201ENST00000291074 KLHDC1Q8N7A1 406 aa15.39■□□□□ 0.05
VPS53-201ENST00000291074 TP73-AS1Q9UF72 201 aa15.39■□□□□ 0.05
VPS53-201ENST00000291074 FAM223BA6NKX1 122 aa15.39■□□□□ 0.05
VPS53-201ENST00000291074 PPIFP30405 207 aaKnown RBP15.39■□□□□ 0.05
VPS53-201ENST00000291074 HNRNPA3P51991 378 aaKnown RBP15.39■□□□□ 0.05
VPS53-201ENST00000291074 CRIP2P52943 208 aaPredicted RBP15.39■□□□□ 0.05
VPS53-201ENST00000291074 FAM223AQ8IWN6 122 aa15.39■□□□□ 0.05
VPS53-201ENST00000291074 FABP5P3A8MUU1 101 aa15.38■□□□□ 0.05
VPS53-201ENST00000291074 IGHV3-11P01762 117 aa15.38■□□□□ 0.05
VPS53-201ENST00000291074 MSMBP08118 114 aa15.38■□□□□ 0.05
VPS53-201ENST00000291074 BLCAPP62952 87 aa15.38■□□□□ 0.05
VPS53-201ENST00000291074 LCNL1Q6ZST4 164 aa15.38■□□□□ 0.05
VPS53-201ENST00000291074 FA2HQ7L5A8 372 aa15.38■□□□□ 0.05
VPS53-201ENST00000291074 MRPL52Q86TS9 123 aaKnown RBP15.38■□□□□ 0.05
VPS53-201ENST00000291074 PRELID3AQ96N28 172 aa15.38■□□□□ 0.05
VPS53-201ENST00000291074 TMEM8BA6NDV4 472 aa15.38■□□□□ 0.05
VPS53-201ENST00000291074 AVPP01185 164 aa15.38■□□□□ 0.05
VPS53-201ENST00000291074 RPS20P60866 119 aaKnown RBP15.38■□□□□ 0.05
VPS53-201ENST00000291074 RNASE8Q8TDE3 154 aaKnown RBP15.38■□□□□ 0.05
VPS53-201ENST00000291074 PMCHL2Q9BQD1 86 aa15.37■□□□□ 0.05
VPS53-201ENST00000291074 hDV102S1A0JD36 115 aa15.37■□□□□ 0.05
VPS53-201ENST00000291074 NCR2O95944 276 aa15.37■□□□□ 0.05
VPS53-201ENST00000291074 OR5AL1P0C617 328 aa15.37■□□□□ 0.05
VPS53-201ENST00000291074 KLK15Q9H2R5 256 aa15.37■□□□□ 0.05
VPS53-201ENST00000291074 SIGLEC8Q9NYZ4 499 aa15.37■□□□□ 0.05
VPS53-201ENST00000291074 CENPEQ02224 2701 aa15.37■□□□□ 0.05
VPS53-201ENST00000291074 RBAKDNA6NC62 111 aa15.36■□□□□ 0.05
VPS53-201ENST00000291074 Q6ZQT7 251 aa15.36■□□□□ 0.05
VPS53-201ENST00000291074 ORMDL3Q8N138 153 aa15.36■□□□□ 0.05
VPS53-201ENST00000291074 MAP1LC3CQ9BXW4 147 aa15.36■□□□□ 0.05
VPS53-201ENST00000291074 C11orf21Q9P2W6 132 aa15.36■□□□□ 0.05
VPS53-201ENST00000291074 U3KQK5 164 aa15.36■□□□□ 0.05
VPS53-201ENST00000291074 POLQO75417 2590 aa15.36■□□□□ 0.05
VPS53-201ENST00000291074 A6NDX4 124 aa15.36■□□□□ 0.05
VPS53-201ENST00000291074 SMAD7O15105 426 aaKnown RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms