RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 HSBP1O75506 76 aa11.79□□□□□ -0.52
SF3B4-201ENST00000271628 HBBP68871 147 aa11.79□□□□□ -0.52
SF3B4-201ENST00000271628 FAM19A2Q8N3H0 131 aa11.79□□□□□ -0.52
SF3B4-201ENST00000271628 KLK15Q9H2R5 256 aa11.79□□□□□ -0.52
SF3B4-201ENST00000271628 U3KQE9 123 aa11.79□□□□□ -0.52
SF3B4-201ENST00000271628 P01737 135 aa11.79□□□□□ -0.52
SF3B4-201ENST00000271628 RPLP1P05386 114 aaKnown RBP11.79□□□□□ -0.52
SF3B4-201ENST00000271628 PMCHL1Q16048 86 aa11.79□□□□□ -0.52
SF3B4-201ENST00000271628 PSG8Q9UQ74 426 aa11.79□□□□□ -0.52
SF3B4-201ENST00000271628 DOPEY2Q9Y3R5 2298 aa11.78□□□□□ -0.52
SF3B4-201ENST00000271628 M0R3E3 92 aa11.78□□□□□ -0.52
SF3B4-201ENST00000271628 IGHG4P01861 327 aa11.78□□□□□ -0.52
SF3B4-201ENST00000271628 NTF3P20783 257 aa11.78□□□□□ -0.52
SF3B4-201ENST00000271628 CAMPP49913 170 aa11.78□□□□□ -0.52
SF3B4-201ENST00000271628 SPATA45Q537H7 98 aa11.78□□□□□ -0.52
SF3B4-201ENST00000271628 KLHDC1Q8N7A1 406 aa11.78□□□□□ -0.52
SF3B4-201ENST00000271628 OR4X2Q8NGF9 303 aa11.78□□□□□ -0.52
SF3B4-201ENST00000271628 SLC50A1Q9BRV3 221 aa11.77□□□□□ -0.52
SF3B4-201ENST00000271628 UQCR10Q9UDW1 63 aa11.77□□□□□ -0.52
SF3B4-201ENST00000271628 TEX15Q9BXT5 2789 aa11.77□□□□□ -0.52
SF3B4-201ENST00000271628 HIST2H2BCQ6DN03 193 aa11.77□□□□□ -0.53
SF3B4-201ENST00000271628 LINC00322Q6ZN03 302 aaPredicted RBP11.77□□□□□ -0.53
SF3B4-201ENST00000271628 WFDC11Q8NEX6 87 aa11.77□□□□□ -0.53
SF3B4-201ENST00000271628 NPFFR1Q9GZQ6 430 aa11.77□□□□□ -0.53
SF3B4-201ENST00000271628 NPIPB6E9PJ23 425 aa11.76□□□□□ -0.53
SF3B4-201ENST00000271628 HOXA3O43365 443 aaPredicted RBP11.76□□□□□ -0.53
SF3B4-201ENST00000271628 IGHV3-11P01762 117 aa11.76□□□□□ -0.53
SF3B4-201ENST00000271628 PSMB8P28062 276 aa11.76□□□□□ -0.53
SF3B4-201ENST00000271628 RBPMS2Q6ZRY4 209 aaKnown RBP11.76□□□□□ -0.53
SF3B4-201ENST00000271628 TCF24Q7RTU0 167 aa11.76□□□□□ -0.53
SF3B4-201ENST00000271628 OR2D3Q8NGH3 330 aa11.76□□□□□ -0.53
SF3B4-201ENST00000271628 SSBP4Q9BWG4 385 aaPredicted RBP11.76□□□□□ -0.53
SF3B4-201ENST00000271628 M0R2Z0 102 aa11.75□□□□□ -0.53
SF3B4-201ENST00000271628 APOHP02749 345 aaPredicted RBP11.75□□□□□ -0.53
SF3B4-201ENST00000271628 CIARTQ8N365 385 aaPredicted RBP11.75□□□□□ -0.53
SF3B4-201ENST00000271628 GTSF1Q8WW33 167 aa11.75□□□□□ -0.53
SF3B4-201ENST00000271628 MXRA5Q9NR99 2828 aa11.75□□□□□ -0.53
SF3B4-201ENST00000271628 FAM181BA6NEQ2 426 aa11.75□□□□□ -0.53
SF3B4-201ENST00000271628 TRBV12-3P01733 135 aa11.75□□□□□ -0.53
SF3B4-201ENST00000271628 IGLC3P0DOY3 106 aa11.75□□□□□ -0.53
SF3B4-201ENST00000271628 ZNF124Q15973 351 aa11.75□□□□□ -0.53
SF3B4-201ENST00000271628 SAPCD1Q5SSQ6 148 aa11.75□□□□□ -0.53
SF3B4-201ENST00000271628 C16orf54Q6UWD8 224 aa11.75□□□□□ -0.53
SF3B4-201ENST00000271628 CLEC5AQ9NY25 188 aa11.75□□□□□ -0.53
SF3B4-201ENST00000271628 IGHV3-66A0A0C4DH42 116 aa11.74□□□□□ -0.53
SF3B4-201ENST00000271628 C20orf202A1L168 122 aa11.74□□□□□ -0.53
SF3B4-201ENST00000271628 CHEK1O14757 476 aa11.74□□□□□ -0.53
SF3B4-201ENST00000271628 ZNF207O43670 478 aaKnown RBP11.74□□□□□ -0.53
SF3B4-201ENST00000271628 BTF3P20290 206 aaKnown RBP11.74□□□□□ -0.53
SF3B4-201ENST00000271628 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.74□□□□□ -0.53
SF3B4-201ENST00000271628 PEF1Q9UBV8 284 aaKnown RBP11.74□□□□□ -0.53
SF3B4-201ENST00000271628 CREBBPQ92793 2442 aa11.74□□□□□ -0.53
SF3B4-201ENST00000271628 TMEM95Q3KNT9 176 aa11.74□□□□□ -0.53
SF3B4-201ENST00000271628 LCN12Q6JVE5 192 aa11.74□□□□□ -0.53
SF3B4-201ENST00000271628 RNASEKQ6P5S7 137 aaKnown RBP11.74□□□□□ -0.53
SF3B4-201ENST00000271628 FOXC2Q99958 501 aa11.74□□□□□ -0.53
SF3B4-201ENST00000271628 IGHV3OR16-13A0A075B7E8 117 aa11.73□□□□□ -0.53
SF3B4-201ENST00000271628 IGHV3-74A0A0B4J1X5 117 aa11.73□□□□□ -0.53
SF3B4-201ENST00000271628 CT45A10P0DMU9 189 aa11.73□□□□□ -0.53
SF3B4-201ENST00000271628 ZNF25P17030 456 aaPredicted RBP11.73□□□□□ -0.53
SF3B4-201ENST00000271628 FOXA3P55318 350 aaPredicted RBP11.73□□□□□ -0.53
SF3B4-201ENST00000271628 COL5A1-AS1Q5SY13 56 aa11.73□□□□□ -0.53
SF3B4-201ENST00000271628 DMRTA1Q5VZB9 504 aa11.73□□□□□ -0.53
SF3B4-201ENST00000271628 UNQ9165/PRO28630Q6UXU0 137 aa11.73□□□□□ -0.53
SF3B4-201ENST00000271628 CHCHD1Q96BP2 118 aaKnown RBP11.73□□□□□ -0.53
SF3B4-201ENST00000271628 PGLYRP4Q96LB8 373 aa11.73□□□□□ -0.53
SF3B4-201ENST00000271628 NDFIP1Q9BT67 221 aa11.73□□□□□ -0.53
SF3B4-201ENST00000271628 GAGE1Q13065 139 aa11.72□□□□□ -0.53
SF3B4-201ENST00000271628 COX8CQ7Z4L0 72 aa11.72□□□□□ -0.53
SF3B4-201ENST00000271628 GLMPQ8WWB7 406 aa11.72□□□□□ -0.53
SF3B4-201ENST00000271628 MRPL53Q96EL3 112 aaKnown RBP11.72□□□□□ -0.53
SF3B4-201ENST00000271628 ZC2HC1AQ96GY0 325 aa11.72□□□□□ -0.53
SF3B4-201ENST00000271628 ZNF469Q96JG9 3925 aaPredicted RBP11.72□□□□□ -0.53
SF3B4-201ENST00000271628 IGHV3-49A0A0A0MS15 119 aa11.72□□□□□ -0.53
SF3B4-201ENST00000271628 RBAKDNA6NC62 111 aa11.72□□□□□ -0.53
SF3B4-201ENST00000271628 C2orf70A6NJV1 201 aa11.72□□□□□ -0.53
SF3B4-201ENST00000271628 HAX1O00165 279 aa11.72□□□□□ -0.53
SF3B4-201ENST00000271628 SMAD7O15105 426 aaKnown RBP11.72□□□□□ -0.53
SF3B4-201ENST00000271628 ELANEP08246 267 aa11.72□□□□□ -0.53
SF3B4-201ENST00000271628 EBLN2Q6P2I7 272 aa11.72□□□□□ -0.53
SF3B4-201ENST00000271628 LCNL1Q6ZST4 164 aa11.72□□□□□ -0.53
SF3B4-201ENST00000271628 TMEM86BQ8N661 226 aa11.72□□□□□ -0.53
SF3B4-201ENST00000271628 HELZ2Q9BYK8 2649 aaKnown RBP11.72□□□□□ -0.53
SF3B4-201ENST00000271628 G0S2P27469 103 aa11.71□□□□□ -0.53
SF3B4-201ENST00000271628 FAM106AQ4KMX7 169 aa11.71□□□□□ -0.53
SF3B4-201ENST00000271628 ZNF702PQ9H963 129 aa11.71□□□□□ -0.53
SF3B4-201ENST00000271628 TRAV9-2A0A087WT02 112 aa11.71□□□□□ -0.54
SF3B4-201ENST00000271628 IGKV2-40A0A087WW87 121 aaPredicted RBP11.71□□□□□ -0.54
SF3B4-201ENST00000271628 K7EMT4 169 aa11.71□□□□□ -0.54
SF3B4-201ENST00000271628 IGKV2D-40P01614 121 aaPredicted RBP11.71□□□□□ -0.54
SF3B4-201ENST00000271628 FOXE3Q13461 319 aa11.71□□□□□ -0.54
SF3B4-201ENST00000271628 IGFL4Q6B9Z1 124 aa11.71□□□□□ -0.54
SF3B4-201ENST00000271628 Q6ZN92 141 aa11.71□□□□□ -0.54
SF3B4-201ENST00000271628 C8orf86Q6ZUL3 223 aa11.71□□□□□ -0.54
SF3B4-201ENST00000271628 GPHB5Q86YW7 130 aa11.71□□□□□ -0.54
SF3B4-201ENST00000271628 PRR25Q96S07 402 aa11.71□□□□□ -0.54
SF3B4-201ENST00000271628 TMEM208Q9BTX3 173 aa11.71□□□□□ -0.54
SF3B4-201ENST00000271628 PDZD2O15018 2839 aa11.7□□□□□ -0.54
SF3B4-201ENST00000271628 CRXO43186 299 aaPredicted RBP11.7□□□□□ -0.54
SF3B4-201ENST00000271628 DLEU1O43261 78 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms