RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 A0A1B0GUS0 222 aa8.98□□□□□ -0.97
VPS4A-201ENST00000254950 OR11H12B2RN74 326 aa8.98□□□□□ -0.97
VPS4A-201ENST00000254950 CXCL1P09341 107 aa8.98□□□□□ -0.97
VPS4A-201ENST00000254950 ZNF492Q9P255 531 aa8.98□□□□□ -0.97
VPS4A-201ENST00000254950 RRN3P1Q2M238 152 aa8.97□□□□□ -0.97
VPS4A-201ENST00000254950 ACTL10Q5JWF8 245 aa8.97□□□□□ -0.97
VPS4A-201ENST00000254950 C3orf56Q8N813 242 aa8.97□□□□□ -0.97
VPS4A-201ENST00000254950 CCL24O00175 119 aa8.97□□□□□ -0.97
VPS4A-201ENST00000254950 GZMBP10144 247 aa8.97□□□□□ -0.97
VPS4A-201ENST00000254950 GPHB5Q86YW7 130 aa8.97□□□□□ -0.97
VPS4A-201ENST00000254950 F2Z2F3 143 aa8.97□□□□□ -0.97
VPS4A-201ENST00000254950 K7EMT4 169 aa8.97□□□□□ -0.97
VPS4A-201ENST00000254950 FOXA3P55318 350 aaPredicted RBP8.97□□□□□ -0.97
VPS4A-201ENST00000254950 ATP5L2Q7Z4Y8 100 aa8.97□□□□□ -0.97
VPS4A-201ENST00000254950 PACRGQ96M98 296 aaPredicted RBP8.97□□□□□ -0.97
VPS4A-201ENST00000254950 LOC389332A0A1B0GUA5 103 aa8.96□□□□□ -0.97
VPS4A-201ENST00000254950 TMEM136Q6ZRR5 245 aa8.96□□□□□ -0.97
VPS4A-201ENST00000254950 GTSCR1Q86UQ5 136 aa8.96□□□□□ -0.97
VPS4A-201ENST00000254950 OR8A1Q8NGG7 326 aa8.96□□□□□ -0.97
VPS4A-201ENST00000254950 PRR25Q96S07 402 aa8.96□□□□□ -0.97
VPS4A-201ENST00000254950 ACANP16112 2415 aa8.96□□□□□ -0.97
VPS4A-201ENST00000254950 PPIFP30405 207 aaKnown RBP8.96□□□□□ -0.98
VPS4A-201ENST00000254950 C16orf54Q6UWD8 224 aa8.96□□□□□ -0.98
VPS4A-201ENST00000254950 MAP1LC3AQ9H492 121 aa8.96□□□□□ -0.98
VPS4A-201ENST00000254950 SETD2Q9BYW2 2564 aaPredicted RBP8.96□□□□□ -0.98
VPS4A-201ENST00000254950 IGHV4OR15-8A0A075B7B6 117 aa8.96□□□□□ -0.98
VPS4A-201ENST00000254950 A0A087WW49 117 aa8.96□□□□□ -0.98
VPS4A-201ENST00000254950 TRBV12-3P01733 135 aa8.96□□□□□ -0.98
VPS4A-201ENST00000254950 IQCJQ1A5X6 159 aa8.96□□□□□ -0.98
VPS4A-201ENST00000254950 HLA-DMBP28068 263 aa8.95□□□□□ -0.98
VPS4A-201ENST00000254950 SLURP1P55000 103 aa8.95□□□□□ -0.98
VPS4A-201ENST00000254950 FAM74A4Q5TZK3 123 aa8.95□□□□□ -0.98
VPS4A-201ENST00000254950 MRPL53Q96EL3 112 aaKnown RBP8.95□□□□□ -0.98
VPS4A-201ENST00000254950 GNB1LQ9BYB4 327 aa8.95□□□□□ -0.98
VPS4A-201ENST00000254950 SRSF1Q07955 248 aaKnown RBP eCLIP8.95□□□□□ -0.98
VPS4A-201ENST00000254950 FAM231DQ6ZW35 169 aa8.95□□□□□ -0.98
VPS4A-201ENST00000254950 CDX1P47902 265 aaPredicted RBP8.95□□□□□ -0.98
VPS4A-201ENST00000254950 TRBV20OR9-2A0A075B6H5 130 aa8.95□□□□□ -0.98
VPS4A-201ENST00000254950 CLPSL1A2RUU4 121 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 H3BVH4 76 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 PFN1P07737 140 aaKnown RBP8.94□□□□□ -0.98
VPS4A-201ENST00000254950 EGR2P11161 476 aaPredicted RBP8.94□□□□□ -0.98
VPS4A-201ENST00000254950 NUP35Q8NFH5 326 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 TRGV11A0A075B6L2 103 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 TRAV12-3A0A0B4J271 114 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 LY6G6DO95868 133 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 CACNG7P62955 275 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 CT83Q5H943 113 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 UNQ9165/PRO28630Q6UXU0 137 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 ZNF503Q96F45 646 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 GPR61Q9BZJ8 451 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 PHOX2AO14813 284 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 FCER1GP30273 86 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 ZNF56Q15929 161 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 C12orf54Q6X4T0 127 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 PRELID3AQ96N28 172 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 AP1S3Q96PC3 154 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 VGLL1Q99990 258 aa8.94□□□□□ -0.98
VPS4A-201ENST00000254950 SSBP4Q9BWG4 385 aaPredicted RBP8.94□□□□□ -0.98
VPS4A-201ENST00000254950 OR5AL1P0C617 328 aa8.93□□□□□ -0.98
VPS4A-201ENST00000254950 IGLC2P0DOY2 106 aa8.93□□□□□ -0.98
VPS4A-201ENST00000254950 ZNF705AQ6ZN79 300 aaPredicted RBP8.93□□□□□ -0.98
VPS4A-201ENST00000254950 Q6ZSV7 163 aa8.93□□□□□ -0.98
VPS4A-201ENST00000254950 ARL6IP6Q8N6S5 226 aa8.93□□□□□ -0.98
VPS4A-201ENST00000254950 HSPB8Q9UJY1 196 aa8.93□□□□□ -0.98
VPS4A-201ENST00000254950 INAFM1C9JVW0 142 aa8.93□□□□□ -0.98
VPS4A-201ENST00000254950 RASL11AQ6T310 242 aa8.93□□□□□ -0.98
VPS4A-201ENST00000254950 LYZL1Q6UWQ5 148 aa8.93□□□□□ -0.98
VPS4A-201ENST00000254950 ORMDL3Q8N138 153 aa8.93□□□□□ -0.98
VPS4A-201ENST00000254950 OR9G4Q8NGQ1 327 aa8.93□□□□□ -0.98
VPS4A-201ENST00000254950 C8orf49Q96NF6 230 aa8.93□□□□□ -0.98
VPS4A-201ENST00000254950 GOLT1BQ9Y3E0 138 aa8.93□□□□□ -0.98
VPS4A-201ENST00000254950 KALRNO60229 2985 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 FAM231BA6NCW3 169 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 PRSS1P07477 247 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 DMRT1Q9Y5R6 373 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 ADGRG4Q8IZF6 3080 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 LTAP01374 205 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 G0S2P27469 103 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 AGPAT4-IT1Q9H0P7 198 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 ZNF702PQ9H963 129 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 FLNBO75369 2602 aaKnown RBP8.92□□□□□ -0.98
VPS4A-201ENST00000254950 C2orf70A6NJV1 201 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 PPP1R17O96001 155 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 DGAT2L7PQ6IED9 249 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 Q6ZS46 218 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 PIFOQ8TCI5 191 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 C4orf3Q8WVX3 66 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 MAP1LC3CQ9BXW4 147 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 GFRA4Q9GZZ7 299 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 MS4A6AQ9H2W1 248 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 V9GYV3 84 aa8.92□□□□□ -0.98
VPS4A-201ENST00000254950 AP5S1Q9NUS5 200 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 HIST1H2BKO60814 126 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 HIST1H2BJP06899 126 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 HIST1H2BOP23527 126 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 HIST1H2BBP33778 126 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 HIST1H2BDP58876 126 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 HIST1H2BCP62807 126 aa8.91□□□□□ -0.98
VPS4A-201ENST00000254950 HIST2H2BEQ16778 126 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms