RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 KIAA0556O60303 1618 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 PRIMA1Q86XR5 153 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 CRB1P82279 1406 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 XRN1Q8IZH2 1706 aaKnown RBP2.85□□□□□ -1.95
SCN1A-221ENST00000641996 ABCA6Q8N139 1617 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 C8orf87E5RJ46 101 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 SH2D1AO60880 128 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 CYBAP13498 195 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 CCL1P22362 96 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 C1orf140Q5VVS0 124 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 Q6ZVQ6 151 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 Q8NA96 180 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 A0A0G2JNJ9 132 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 TMEM30CPA0ZSE6 113 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 LRCOL1A6NCL2 159 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 MSGN1A6NI15 193 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 C8orf82Q6P1X6 216 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-221ENST00000641996 SDIM1Q6ZPB5 146 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 WBP1Q96G27 269 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 Q9UFV3 132 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 DNMT1P26358 1616 aaKnown RBP2.85□□□□□ -1.95
SCN1A-221ENST00000641996 GFRA3O60609 400 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 GASTP01350 101 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 ZGLP1P0C6A0 271 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 C19orf54Q5BKX5 351 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 C9orf139Q6ZV77 190 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 GFI1Q99684 422 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 DKK2Q9UBU2 259 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 C10orf71Q711Q0 1435 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 Q0VG73 95 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 SLC25A29Q8N8R3 303 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 TRAV12-1A0A0B4J245 112 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 LINC00205P59089 165 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 MRPL32Q9BYC8 188 aaKnown RBP2.85□□□□□ -1.95
SCN1A-221ENST00000641996 NRKQ7Z2Y5 1582 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 IQCF6A8MYZ5 107 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 PGLYRP1O75594 196 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-221ENST00000641996 TMEM200BQ69YZ2 307 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 PRR26Q8N8Z3 221 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 TEX49A0A1B0GTD5 131 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 CXCL12P48061 93 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 RPL23P62829 140 aaKnown RBP2.84□□□□□ -1.95
SCN1A-221ENST00000641996 KTN1-AS1Q86SY8 53 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 SERP2Q8N6R1 65 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 SDF2L1Q9HCN8 221 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 SCRT2Q9NQ03 307 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 ZNF818PQ6ZRF7 136 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 PRSS2P07478 247 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 FXYD2P54710 66 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 LINC01545Q5VT33 79 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 COL11A1P12107 1806 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-221ENST00000641996 KIAA1210Q9ULL0 1709 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 CLPSL1A2RUU4 121 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 IL36BQ9NZH7 164 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 C5orf63A6NC05 138 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 LINC01549A6NIU2 74 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 CR2P20023 1033 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 PRR20EP86478 221 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 PRR20CP86479 221 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 PRR20DP86480 221 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 PRR20BP86481 221 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 PRR20AP86496 221 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 RNASE13Q5GAN3 156 aaKnown RBP2.84□□□□□ -1.95
SCN1A-221ENST00000641996 CD177Q8N6Q3 437 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 DDX60LQ5H9U9 1706 aaKnown RBP2.84□□□□□ -1.95
SCN1A-221ENST00000641996 TRAV23DV6A0A075B6W5 121 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 PLA2G5P39877 138 aa2.84□□□□□ -1.95
SCN1A-221ENST00000641996 RSPO4Q2I0M5 234 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-221ENST00000641996 D6R8Y8 96 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 APOHP02749 345 aaPredicted RBP2.84□□□□□ -1.96
SCN1A-221ENST00000641996 MUSTN1Q8IVN3 82 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 ADGRB3O60242 1522 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 LYPD3O95274 346 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 ZNF726P1Q15940 193 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 WFDC5Q8TCV5 224 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 CEP170BQ9Y4F5 1589 aaPredicted RBP2.84□□□□□ -1.96
SCN1A-221ENST00000641996 WIZO95785 1651 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 IGKV1D-8A0A087WSZ0 117 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 VN1R4Q7Z5H5 301 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 LINC00311Q8N616 119 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 PPP1R3DO95685 299 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 SMIM10L2AP0DMW4 78 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 SMIM10L2BP0DMW5 78 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 SPANXN5Q5MJ07 72 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 NRACQ8N912 160 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 TAS2R4Q9NYW5 299 aa2.84□□□□□ -1.96
SCN1A-221ENST00000641996 PEX7O00628 323 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 NUP35Q8NFH5 326 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 MDFICQ9P1T7 246 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 C15orf61A6NNL5 157 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 SLC25A48Q6ZT89 311 aaKnown RBP2.83□□□□□ -1.96
SCN1A-221ENST00000641996 UPK3BQ9BT76 320 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 CMC2Q9NRP2 79 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 FRMPD1Q5SYB0 1578 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 IFI27P40305 119 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-221ENST00000641996 CTRLP40313 264 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 PCP2Q8IVA1 136 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 PLGLAQ15195 96 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 TMEM14EPQ6UXP3 125 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 FAM90A26D6RGX4 464 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms