RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 MRPL27Q9P0M9 148 aaKnown RBP8.09□□□□□ -1.11
VPS11-208ENST00000621676 NAT8BQ9UHF3 227 aa8.09□□□□□ -1.11
VPS11-208ENST00000621676 SNURFLB1AK76 121 aa8.09□□□□□ -1.11
VPS11-208ENST00000621676 IGHG2P01859 326 aa8.09□□□□□ -1.11
VPS11-208ENST00000621676 NPFFR1Q9GZQ6 430 aa8.09□□□□□ -1.11
VPS11-208ENST00000621676 TRBV19A0A075B6N1 114 aa8.08□□□□□ -1.12
VPS11-208ENST00000621676 F2Z2F3 143 aa8.08□□□□□ -1.12
VPS11-208ENST00000621676 ZNF138P52744 262 aa8.08□□□□□ -1.12
VPS11-208ENST00000621676 ZNF414Q96IQ9 312 aa8.08□□□□□ -1.12
VPS11-208ENST00000621676 ARL2-SNX15V9GYD0 113 aa8.08□□□□□ -1.12
VPS11-208ENST00000621676 GATCO43716 136 aaKnown RBP8.08□□□□□ -1.12
VPS11-208ENST00000621676 GCGP01275 180 aa8.08□□□□□ -1.12
VPS11-208ENST00000621676 CSN1S1P47710 185 aa8.08□□□□□ -1.12
VPS11-208ENST00000621676 C15orf54Q8N8G6 183 aa8.08□□□□□ -1.12
VPS11-208ENST00000621676 TRAPPC1Q9Y5R8 145 aa8.08□□□□□ -1.12
VPS11-208ENST00000621676 LINC00477Q96M19 166 aa8.08□□□□□ -1.12
VPS11-208ENST00000621676 HIGD1CA8MV81 97 aa8.07□□□□□ -1.12
VPS11-208ENST00000621676 CHEK1O14757 476 aa8.07□□□□□ -1.12
VPS11-208ENST00000621676 LCN12Q6JVE5 192 aa8.07□□□□□ -1.12
VPS11-208ENST00000621676 MRPL32Q9BYC8 188 aaKnown RBP8.07□□□□□ -1.12
VPS11-208ENST00000621676 FABP1P07148 127 aa8.07□□□□□ -1.12
VPS11-208ENST00000621676 LINC00469Q8N7U9 141 aa8.07□□□□□ -1.12
VPS11-208ENST00000621676 OR1L6Q8NGR2 347 aa8.07□□□□□ -1.12
VPS11-208ENST00000621676 A0A1W2PRE2 83 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 H3BRN7 92 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 BUB3O43684 328 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 P01737 135 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 CD28P10747 220 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 NTF3P20783 257 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 IQCJQ1A5X6 159 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 PSMG4Q5JS54 123 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 TUBA4BQ9H853 241 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 PSG8Q9UQ74 426 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 CLPSL1A2RUU4 121 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 RPL7P18124 248 aaKnown RBP8.06□□□□□ -1.12
VPS11-208ENST00000621676 PMCHL1Q16048 86 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 FAM209BQ5JX69 171 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 PVRIGQ6DKI7 326 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 Q6YL49 198 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 SIGLEC15Q6ZMC9 328 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 LURAP1LQ8IV03 231 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 ZC2HC1AQ96GY0 325 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 CITED2Q99967 270 aaPredicted RBP8.06□□□□□ -1.12
VPS11-208ENST00000621676 MCRIP2Q9BUT9 160 aaKnown RBP8.06□□□□□ -1.12
VPS11-208ENST00000621676 HOXD3P31249 432 aaPredicted RBP8.06□□□□□ -1.12
VPS11-208ENST00000621676 GDF5OSQ5U4N7 250 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 Q6ZSV7 163 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 TMEM256Q8N2U0 113 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 C5orf17Q8NAS9 161 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 CTDSP1Q9GZU7 261 aa8.06□□□□□ -1.12
VPS11-208ENST00000621676 PEF1Q9UBV8 284 aaKnown RBP8.06□□□□□ -1.12
VPS11-208ENST00000621676 LOC389332A0A1B0GUA5 103 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 M0R2Z0 102 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 HIST1H2BKO60814 126 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 HIST1H2BJP06899 126 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 HIST1H2BOP23527 126 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 HIST1H2BBP33778 126 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 HIST1H2BDP58876 126 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 HIST1H2BCP62807 126 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 HIST2H2BEQ16778 126 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.05□□□□□ -1.12
VPS11-208ENST00000621676 APRG1Q8IVJ8 170 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 HIST1H2BHQ93079 126 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 HIST1H2BNQ99877 126 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 HIST1H2BMQ99879 126 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 GSN-AS1Q9NRJ2 163 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 TRAV30A0A087WSZ9 112 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 IGLV2-8P01709 118 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 S100A2P29034 98 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 ZNF80P51504 273 aaPredicted RBP8.05□□□□□ -1.12
VPS11-208ENST00000621676 FOXE3Q13461 319 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 CDPF1Q6NVV7 123 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 FAM19A2Q8N3H0 131 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 PPP1R14DQ9NXH3 145 aa8.05□□□□□ -1.12
VPS11-208ENST00000621676 CT45A10P0DMU9 189 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 PNRC1Q12796 327 aaPredicted RBP8.04□□□□□ -1.12
VPS11-208ENST00000621676 C20orf173Q96LM9 149 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 ATG101Q9BSB4 218 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 ZNF702PQ9H963 129 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 MSRB1Q9NZV6 116 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 XKRY2A2RUG3 117 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 NUPR1O60356 82 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 PFN1P07737 140 aaKnown RBP8.04□□□□□ -1.12
VPS11-208ENST00000621676 ATP5IP56385 69 aaPredicted RBP8.04□□□□□ -1.12
VPS11-208ENST00000621676 KCNIP4Q6PIL6 250 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 OR10D4PQ8NGN7 298 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 GPR82Q96P67 336 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 ZFAND3Q9H8U3 227 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 NIT2Q9NQR4 276 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 GATA3P23771 443 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 TCTEX1D4Q5JR98 221 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 WFDC10AQ9H1F0 79 aa8.04□□□□□ -1.12
VPS11-208ENST00000621676 TRBV9A0A0B4J1U6 114 aa8.03□□□□□ -1.12
VPS11-208ENST00000621676 WI2-2373I1.2A0A1W2PRP0 233 aa8.03□□□□□ -1.12
VPS11-208ENST00000621676 KNCNA6PVL3 124 aa8.03□□□□□ -1.12
VPS11-208ENST00000621676 SMKR1H3BMG3 65 aa8.03□□□□□ -1.12
VPS11-208ENST00000621676 SCGB2A1O75556 95 aa8.03□□□□□ -1.12
VPS11-208ENST00000621676 RNASE4P34096 147 aaKnown RBP8.03□□□□□ -1.12
VPS11-208ENST00000621676 YPEL3P61236 119 aaPredicted RBP8.03□□□□□ -1.12
VPS11-208ENST00000621676 INS-IGF2F8WCM5 200 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms