RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 PRDM13Q9H4Q3 707 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 PEMTQ9UBM1 199 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 TRAV9-2A0A087WT02 112 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 CRXO43186 299 aaPredicted RBP7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 SYNJ2BPP57105 145 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 POU2AF1Q16633 256 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 LBHQ53QV2 105 aaPredicted RBP7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 Q5PR19 223 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 Q8N7P7 452 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 IGKV1OR2-108A0A075B7D4 117 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 C1orf122Q6ZSJ8 110 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 TTC9CQ8N5M4 171 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 A0A087WWL8 130 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 SPRY2O43597 315 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 DSCR9P59020 149 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 C12orf54Q6X4T0 127 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 PIP4P2Q8N4L2 257 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 SRSF8Q9BRL6 282 aaKnown RBP7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 GAGE10A6NGK3 116 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 OVOL1O14753 267 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 EIF4EBP1Q13541 118 aaPredicted RBP7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 AMMECR1LQ6DCA0 310 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 C14orf178Q8N769 122 aaPredicted RBP7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 LINC00477Q96M19 166 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 PROP1O75360 226 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 GTSCR1Q86UQ5 136 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 LAMTOR2Q9Y2Q5 125 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 TNFRSF18Q9Y5U5 241 aa7.05□□□□□ -1.28
PDLIM5-222ENST00000615540 MAJINQ3KP22 176 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 C8orf86Q6ZUL3 223 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 STHQ8IWL8 128 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 C18orf32Q8TCD1 76 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 ST20Q9HBF5 79 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 LOC107984156A0A0G2JMH3 177 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 C19orf84I3L1E1 186 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 FRMD6-AS1P0C7T7 363 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 RASL11AQ6T310 242 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 ARL17AQ8IVW1 177 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 C8orf31Q8N9H6 132 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 KLK9Q9UKQ9 250 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 CBY1Q9Y3M2 126 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 I3L2K1 104 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 LTAP01374 205 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 YPEL3P61236 119 aaPredicted RBP7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 PEF1Q9UBV8 284 aaKnown RBP7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 IGHV4-61A0A0C4DH41 118 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 EREGO14944 169 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 P0C879 139 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 ZNF491Q8N8L2 437 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 IGHV4-30-2A0A087WSY4 118 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 SRSF1Q07955 248 aaKnown RBP eCLIP7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 COL6A6A6NMZ7 2263 aa7.04□□□□□ -1.28
PDLIM5-222ENST00000615540 TEX22C9J3V5 150 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 NUPR1O60356 82 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 IGHV4-39P01824 125 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 C1orf194Q5T5A4 169 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 LYPD1Q8N2G4 141 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 IGF2BP2-AS1Q96M15 143 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 RP1L1Q8IWN7 2480 aaPredicted RBP7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 TRAV12-2A0A075B6T6 113 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 NAA38Q9BRA0 125 aaKnown RBP7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 LOC400499M0QZD8 3231 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 LAGE3Q14657 143 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 KLHL30-AS1Q8NEE0 82 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 OR11H6Q8NGC7 330 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 JMJD8Q96S16 334 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 GFRA4Q9GZZ7 299 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 CHTOPQ9Y3Y2 248 aaKnown RBP7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 FABP2P12104 132 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 ZNF492Q9P255 531 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 MED13Q9UHV7 2174 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 IGKCP01834 107 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 SMIM13P0DJ93 91 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 TMEM14CQ9P0S9 112 aa7.03□□□□□ -1.28
PDLIM5-222ENST00000615540 CENPVL3A0A0U1RRI6 287 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 PET117Q6UWS5 81 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 FAM186AA6NE01 2351 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 A0A087X0K7 114 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 SAP30O75446 220 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 IGHV1-24A0A0C4DH33 117 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 NPIPB6E9PJ23 425 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 SYS1-DBNDD2H3BUS1 97 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 GP9P14770 177 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 SFTA2Q6UW10 78 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 DYNAPQ8N1N2 210 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 NPBQ8NG41 125 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 C11orf52Q96A22 123 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 IFI27L1Q96BM0 104 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 F6UB75 175 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 RPL35AP18077 110 aaKnown RBP7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 TMEM158Q8WZ71 300 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 USMG5Q96IX5 58 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 KIAA1549Q9HCM3 1950 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 IGHV7-81A0A0B4J1V7 117 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 K7EIM0 57 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 HOXA3O43365 443 aaPredicted RBP7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 ATP5LO75964 103 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 IGHV3-53P01767 116 aa7.02□□□□□ -1.29
PDLIM5-222ENST00000615540 TMEM262E9PQX1 116 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms