RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 IGHV3-74A0A0B4J1X5 117 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 IGHV3-43A0A0B4J1X8 118 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 DHRS12A0PJE2 317 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 A8MWP6 167 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 DISC1C4P0D8 188 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 C8orf87E5RJ46 101 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 C15orf65H3BRN8 121 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 PANO1I0J062 215 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 CDC42EP2O14613 210 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 MRPS14O60783 128 aaKnown RBP2.81□□□□□ -1.96
LINC00540-201ENST00000611481 CA11O75493 328 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 IGLV2-8P01709 118 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 APOC1P02654 83 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 C1QBP02746 253 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 CD5P06127 495 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 KRTAP1-4P0C5Y4 121 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 M6PRP20645 277 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 PRSS3P35030 304 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 CTRLP40313 264 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 CDC42P60953 191 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 RPL37AP61513 92 aaKnown RBP2.81□□□□□ -1.96
LINC00540-201ENST00000611481 RHOGP84095 191 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 ATP5G2Q06055 141 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 FXYD3Q14802 87 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 RSU1Q15404 277 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 ATAD3CQ5T2N8 411 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 OR10K2Q6IF99 312 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 TIFABQ6ZNK6 161 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 SCXQ7RTU7 201 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 LINC00311Q8N616 119 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 OR10G4Q8NGN3 311 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 OR4K13Q8NH42 304 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 Q8WTZ3 238 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 FAM104AQ969W3 186 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 TIMM17AQ99595 171 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 HSD17B10Q99714 261 aaKnown RBP2.81□□□□□ -1.96
LINC00540-201ENST00000611481 TMEM14BQ9NUH8 114 aa2.81□□□□□ -1.96
LINC00540-201ENST00000611481 TRAV8-3A0A0A6YYJ7 113 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 LOC389332A0A1B0GUA5 103 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 PLAC8L1A1L4L8 177 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 H3BP45 60 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 M0R1X1 148 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 SDCBPO00560 298 aaPredicted RBP2.8□□□□□ -1.96
LINC00540-201ENST00000611481 FFAR1O14842 300 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 ARL6IP5O75915 188 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 GABARAPO95166 117 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 PRH1P02810 166 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 REG1AP05451 166 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 CSN2P05814 226 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 APELAP0DMC3 54 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 CRISP2P16562 243 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 MEOX2P50222 304 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 PSME3P61289 254 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 MS4A2Q01362 244 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 IFITM2Q01629 132 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 CCDC153Q494R4 210 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 TEX30Q5JUR7 227 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 SFXN4Q6P4A7 337 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 Q6ZSA8 131 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 SLC25A26Q70HW3 274 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 CAMK2N1Q7Z7J9 78 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 GPHB5Q86YW7 130 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 C1orf158Q8N1D5 194 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 OR1L8Q8NGR8 309 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 OR1P1Q8NH06 330 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 KCNS1Q96KK3 526 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 ERMAPQ96PL5 475 aaPredicted RBP2.8□□□□□ -1.96
LINC00540-201ENST00000611481 DPH3P1Q9H4G8 78 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 LINC00574Q9H8X3 128 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 BATF3Q9NR55 127 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 MRPL27Q9P0M9 148 aaKnown RBP2.8□□□□□ -1.96
LINC00540-201ENST00000611481 METTL1Q9UBP6 276 aaKnown RBP2.8□□□□□ -1.96
LINC00540-201ENST00000611481 PRO0461Q9UI25 63 aa2.8□□□□□ -1.96
LINC00540-201ENST00000611481 A0A087WUU8 490 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 A6NIN4 97 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 ZNF705GA8MUZ8 300 aaPredicted RBP2.79□□□□□ -1.96
LINC00540-201ENST00000611481 EVPLLA8MZ36 301 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 CTSDP07339 412 aaPredicted RBP2.79□□□□□ -1.96
LINC00540-201ENST00000611481 OR5G3P0C626 314 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 CXCL3P19876 107 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 DDTP30046 118 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 ZNF137PP52743 207 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 CMC4P56277 68 aaPredicted RBP2.79□□□□□ -1.96
LINC00540-201ENST00000611481 BATFQ16520 125 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 Q1RN00 199 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 FAM222AQ5U5X8 452 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 SPATA31B1PQ5VZV4 182 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 ELP2Q6IA86 826 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 TBPL2Q6SJ96 375 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 UNQ9165/PRO28630Q6UXU0 137 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 Q6ZRU5 148 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 LINC00337Q8N6G1 96 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 ORAOV1Q8WV07 137 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 OR2A7Q96R45 310 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 GPX7Q96SL4 187 aaPredicted RBP2.79□□□□□ -1.96
LINC00540-201ENST00000611481 CMSS1Q9BQ75 279 aaKnown RBP2.79□□□□□ -1.96
LINC00540-201ENST00000611481 RTBDNQ9BSG5 229 aaPredicted RBP2.79□□□□□ -1.96
LINC00540-201ENST00000611481 DCSTAMPQ9H295 470 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 ARMC1Q9NVT9 282 aa2.79□□□□□ -1.96
LINC00540-201ENST00000611481 DOK5Q9P104 306 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms