RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 GPN1Q9HCN4 374 aaPredicted RBP11.16□□□□□ -0.62
VRK3-221ENST00000600284 TIMM8BQ9Y5J9 83 aaPredicted RBP11.16□□□□□ -0.62
VRK3-221ENST00000600284 CBY3A6NI87 242 aa11.15□□□□□ -0.62
VRK3-221ENST00000600284 DEFB130BP0DP73 79 aa11.15□□□□□ -0.62
VRK3-221ENST00000600284 DEFB130AP0DP74 79 aa11.15□□□□□ -0.62
VRK3-221ENST00000600284 FAM3BP58499 235 aaPredicted RBP11.15□□□□□ -0.62
VRK3-221ENST00000600284 TMEM263Q8WUH6 116 aaKnown RBP11.15□□□□□ -0.62
VRK3-221ENST00000600284 ODF3Q96PU9 254 aa11.15□□□□□ -0.62
VRK3-221ENST00000600284 TRAV5A0A0B4J249 113 aa11.14□□□□□ -0.63
VRK3-221ENST00000600284 UBE2L5PA0A1B0GUS4 154 aa11.14□□□□□ -0.63
VRK3-221ENST00000600284 PRAC2D3DTV9 90 aa11.14□□□□□ -0.63
VRK3-221ENST00000600284 RLN2P04090 185 aa11.14□□□□□ -0.63
VRK3-221ENST00000600284 ATP5G1P05496 136 aa11.14□□□□□ -0.63
VRK3-221ENST00000600284 ATP5G3P48201 142 aa11.14□□□□□ -0.63
VRK3-221ENST00000600284 RNASE8Q8TDE3 154 aaKnown RBP11.14□□□□□ -0.63
VRK3-221ENST00000600284 MRPL53Q96EL3 112 aaKnown RBP11.14□□□□□ -0.63
VRK3-221ENST00000600284 TMEM14CQ9P0S9 112 aa11.14□□□□□ -0.63
VRK3-221ENST00000600284 H3BTX0 84 aa11.13□□□□□ -0.63
VRK3-221ENST00000600284 M0R2N4 97 aa11.13□□□□□ -0.63
VRK3-221ENST00000600284 UPK1BO75841 260 aa11.13□□□□□ -0.63
VRK3-221ENST00000600284 HTN1P15515 57 aa11.13□□□□□ -0.63
VRK3-221ENST00000600284 FGF7P21781 194 aa11.13□□□□□ -0.63
VRK3-221ENST00000600284 FCN2Q15485 313 aa11.13□□□□□ -0.63
VRK3-221ENST00000600284 Q6ZR54 194 aa11.13□□□□□ -0.63
VRK3-221ENST00000600284 ENKURQ8TC29 256 aa11.13□□□□□ -0.63
VRK3-221ENST00000600284 NMES1Q9C002 83 aa11.13□□□□□ -0.63
VRK3-221ENST00000600284 SLC25A31Q9H0C2 315 aa11.13□□□□□ -0.63
VRK3-221ENST00000600284 ZNF586Q9NXT0 402 aa11.13□□□□□ -0.63
VRK3-221ENST00000600284 HERC2O95714 4834 aa11.13□□□□□ -0.63
VRK3-221ENST00000600284 DNAH17Q9UFH2 4485 aa11.12□□□□□ -0.63
VRK3-221ENST00000600284 TRBV19A0A075B6N1 114 aa11.12□□□□□ -0.63
VRK3-221ENST00000600284 NPIPB6E9PJ23 425 aa11.12□□□□□ -0.63
VRK3-221ENST00000600284 F5H768 121 aa11.12□□□□□ -0.63
VRK3-221ENST00000600284 RTL8CO15255 209 aa11.12□□□□□ -0.63
VRK3-221ENST00000600284 PRAF2O60831 178 aa11.12□□□□□ -0.63
VRK3-221ENST00000600284 PRB4P10163 310 aaPredicted RBP11.12□□□□□ -0.63
VRK3-221ENST00000600284 HIST1H1EP10412 219 aaKnown RBP11.12□□□□□ -0.63
VRK3-221ENST00000600284 LEPP41159 167 aa11.12□□□□□ -0.63
VRK3-221ENST00000600284 CYCSP99999 105 aaKnown RBP11.12□□□□□ -0.63
VRK3-221ENST00000600284 PDE6HQ13956 83 aa11.12□□□□□ -0.63
VRK3-221ENST00000600284 CCDC28AQ8IWP9 274 aa11.12□□□□□ -0.63
VRK3-221ENST00000600284 PRELID1Q9Y255 219 aa11.12□□□□□ -0.63
VRK3-221ENST00000600284 DNAH2Q9P225 4427 aa11.11□□□□□ -0.63
VRK3-221ENST00000600284 A0A1B0GVY2 172 aa11.11□□□□□ -0.63
VRK3-221ENST00000600284 E5RGE8 158 aa11.11□□□□□ -0.63
VRK3-221ENST00000600284 CT45A10P0DMU9 189 aa11.11□□□□□ -0.63
VRK3-221ENST00000600284 NHLH2Q02577 135 aa11.11□□□□□ -0.63
VRK3-221ENST00000600284 GFI1BQ5VTD9 330 aa11.11□□□□□ -0.63
VRK3-221ENST00000600284 NPCDR1Q9BY65 106 aa11.11□□□□□ -0.63
VRK3-221ENST00000600284 NOP10Q9NPE3 64 aaKnown RBP11.11□□□□□ -0.63
VRK3-221ENST00000600284 FAT2Q9NYQ8 4349 aa11.1□□□□□ -0.63
VRK3-221ENST00000600284 PRSS29PA6NIE9 313 aa11.1□□□□□ -0.63
VRK3-221ENST00000600284 KIR3DS1Q14943 382 aa11.1□□□□□ -0.63
VRK3-221ENST00000600284 SOHLH1Q5JUK2 328 aa11.1□□□□□ -0.63
VRK3-221ENST00000600284 OR5C1Q8NGR4 320 aa11.1□□□□□ -0.63
VRK3-221ENST00000600284 LINC00477Q96M19 166 aa11.1□□□□□ -0.63
VRK3-221ENST00000600284 ATG101Q9BSB4 218 aa11.1□□□□□ -0.63
VRK3-221ENST00000600284 TIMM9Q9Y5J7 89 aa11.1□□□□□ -0.63
VRK3-221ENST00000600284 IGLV2-18A0A075B6J9 118 aa11.09□□□□□ -0.63
VRK3-221ENST00000600284 A6NHS1 94 aa11.09□□□□□ -0.63
VRK3-221ENST00000600284 NDUFB4O95168 129 aa11.09□□□□□ -0.63
VRK3-221ENST00000600284 LINC00612Q8N6U2 182 aa11.09□□□□□ -0.63
VRK3-221ENST00000600284 PYGO2Q9BRQ0 406 aa11.09□□□□□ -0.63
VRK3-221ENST00000600284 PARD6GQ9BYG4 376 aaPredicted RBP11.09□□□□□ -0.63
VRK3-221ENST00000600284 INMT-MINDY4F8WBC2 141 aa11.08□□□□□ -0.64
VRK3-221ENST00000600284 SIX6O95475 246 aa11.08□□□□□ -0.64
VRK3-221ENST00000600284 SLC25A5P05141 298 aaKnown RBP11.08□□□□□ -0.64
VRK3-221ENST00000600284 AAMDCQ9H7C9 122 aa11.08□□□□□ -0.64
VRK3-221ENST00000600284 KCNIP2Q9NS61 270 aa11.08□□□□□ -0.64
VRK3-221ENST00000600284 PTTG2Q9NZH5 202 aa11.08□□□□□ -0.64
VRK3-221ENST00000600284 TRAV12-3A0A0B4J271 114 aa11.07□□□□□ -0.64
VRK3-221ENST00000600284 SNURFLB1AK76 121 aa11.07□□□□□ -0.64
VRK3-221ENST00000600284 M0R3E3 92 aa11.07□□□□□ -0.64
VRK3-221ENST00000600284 NUDT3O95989 172 aa11.07□□□□□ -0.64
VRK3-221ENST00000600284 PYYP10082 97 aa11.07□□□□□ -0.64
VRK3-221ENST00000600284 CCL18P55774 89 aa11.07□□□□□ -0.64
VRK3-221ENST00000600284 IFITM3Q01628 133 aa11.07□□□□□ -0.64
VRK3-221ENST00000600284 THAP6Q8TBB0 222 aa11.07□□□□□ -0.64
VRK3-221ENST00000600284 FAM19A4Q96LR4 140 aa11.07□□□□□ -0.64
VRK3-221ENST00000600284 MARVELD1Q9BSK0 173 aa11.07□□□□□ -0.64
VRK3-221ENST00000600284 SLC25A2Q9BXI2 301 aa11.07□□□□□ -0.64
VRK3-221ENST00000600284 OR5AC2Q9NZP5 309 aa11.07□□□□□ -0.64
VRK3-221ENST00000600284 H0YIZ8 118 aa11.06□□□□□ -0.64
VRK3-221ENST00000600284 NMBP08949 121 aa11.06□□□□□ -0.64
VRK3-221ENST00000600284 DAZ2Q13117 558 aaKnown RBP11.06□□□□□ -0.64
VRK3-221ENST00000600284 LRRC37A5PQ49AS3 106 aa11.06□□□□□ -0.64
VRK3-221ENST00000600284 GCSAMLQ5JQS6 135 aa11.06□□□□□ -0.64
VRK3-221ENST00000600284 C1orf134Q5TEV5 83 aa11.06□□□□□ -0.64
VRK3-221ENST00000600284 C9orf47Q6ZRZ4 202 aa11.06□□□□□ -0.64
VRK3-221ENST00000600284 ZNF503Q96F45 646 aa11.06□□□□□ -0.64
VRK3-221ENST00000600284 FAM167A-AS1Q96KT0 104 aa11.06□□□□□ -0.64
VRK3-221ENST00000600284 LINC00467Q9BRT7 94 aa11.06□□□□□ -0.64
VRK3-221ENST00000600284 MRPL32Q9BYC8 188 aaKnown RBP11.06□□□□□ -0.64
VRK3-221ENST00000600284 WDR61Q9GZS3 305 aaKnown RBP11.06□□□□□ -0.64
VRK3-221ENST00000600284 C7orf71A4D174 169 aa11.05□□□□□ -0.64
VRK3-221ENST00000600284 KLLNB2CW77 178 aa11.05□□□□□ -0.64
VRK3-221ENST00000600284 C17orf112F2Z3M2 114 aa11.05□□□□□ -0.64
VRK3-221ENST00000600284 J3KRW8 73 aa11.05□□□□□ -0.64
VRK3-221ENST00000600284 NBEAP1P0C6P0 100 aa11.05□□□□□ -0.64
VRK3-221ENST00000600284 ERCC8Q13216 396 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms