RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, human

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-218	ENST00000598907	H2AFB1	P0C5Y9	115 aa		10.18	□□□□□ -0.78
SHKBP1-218	ENST00000598907	SIGLEC15	Q6ZMC9	328 aa		10.18	□□□□□ -0.78
SHKBP1-218	ENST00000598907	PQLC2	Q6ZP29	291 aa		10.18	□□□□□ -0.78
SHKBP1-218	ENST00000598907	ZNF767P	Q75MW2	155 aa		10.18	□□□□□ -0.78
SHKBP1-218	ENST00000598907	TCF24	Q7RTU0	167 aa		10.18	□□□□□ -0.78
SHKBP1-218	ENST00000598907	LRRC20	Q8TCA0	184 aa		10.18	□□□□□ -0.78
SHKBP1-218	ENST00000598907	FXYD5	Q96DB9	178 aa		10.18	□□□□□ -0.78
SHKBP1-218	ENST00000598907	OR51M1	Q9H341	326 aa		10.18	□□□□□ -0.78
SHKBP1-218	ENST00000598907	MAP1LC3B2	A6NCE7	125 aa		10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907	HELT	A6NFD8	242 aa		10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907	ZNF705E	A8MWA4	302 aa	Predicted RBP	10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907		H3BQ15	152 aa		10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907	CXorf1	O96002	111 aa		10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907	ARL14EPL	P0DKL9	152 aa		10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907	PYY	P10082	97 aa		10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907	HIST1H1E	P10412	219 aa	Known RBP	10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907	APOC4	P55056	127 aa		10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907	BLOC1S1	P78537	153 aa		10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907	LCN15	Q6UWW0	184 aa		10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907		Q6ZWC4	215 aa		10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907	LYPD6B	Q8NI32	183 aa		10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907	PAXX	Q9BUH6	204 aa		10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907	MAP1LC3B	Q9GZQ8	125 aa		10.17	□□□□□ -0.78
SHKBP1-218	ENST00000598907	TSPAN4	O14817	238 aa		10.16	□□□□□ -0.78
SHKBP1-218	ENST00000598907	RGS13	O14921	159 aa		10.16	□□□□□ -0.78
SHKBP1-218	ENST00000598907	OR7C2	O60412	319 aa		10.16	□□□□□ -0.78
SHKBP1-218	ENST00000598907	GCHFR	P30047	84 aa		10.16	□□□□□ -0.78
SHKBP1-218	ENST00000598907	GALR1	P47211	349 aa		10.16	□□□□□ -0.78
SHKBP1-218	ENST00000598907	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		10.16	□□□□□ -0.78
SHKBP1-218	ENST00000598907	TMEM61	Q8N0U2	210 aa		10.16	□□□□□ -0.78
SHKBP1-218	ENST00000598907	C11orf45	Q8TAV5	145 aa		10.16	□□□□□ -0.78
SHKBP1-218	ENST00000598907	SFT2D1	Q8WV19	159 aa		10.16	□□□□□ -0.78
SHKBP1-218	ENST00000598907	HRH4	Q9H3N8	390 aa		10.16	□□□□□ -0.78
SHKBP1-218	ENST00000598907	ZNF586	Q9NXT0	402 aa		10.16	□□□□□ -0.78
SHKBP1-218	ENST00000598907	APLN	Q9ULZ1	77 aa		10.16	□□□□□ -0.78
SHKBP1-218	ENST00000598907	DMBT1	Q9UGM3	2413 aa	Predicted RBP	10.16	□□□□□ -0.78
SHKBP1-218	ENST00000598907	TRAV2	A0A0B4J234	112 aa		10.15	□□□□□ -0.78
SHKBP1-218	ENST00000598907	NMB	P08949	121 aa		10.15	□□□□□ -0.78
SHKBP1-218	ENST00000598907	MEOX2	P50222	304 aa		10.15	□□□□□ -0.78
SHKBP1-218	ENST00000598907	FGF8	P55075	233 aa	Predicted RBP	10.15	□□□□□ -0.78
SHKBP1-218	ENST00000598907	GUK1	Q16774	197 aa		10.15	□□□□□ -0.78
SHKBP1-218	ENST00000598907	TRBV19	A0A075B6N1	114 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	SOCS3	O14543	225 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	ZNF253	O75346	499 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	NDUFB4	O95168	129 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	HBE1	P02100	147 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	OR10J4	P0C629	311 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	NBEAP1	P0C6P0	100 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	TCTA	P57738	103 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	UBE2L3	P68036	154 aa	Known RBP	10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	CCL20	P78556	96 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	PDE6H	Q13956	83 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	DCANP1	Q8TF63	244 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	MS4A6A	Q9H2W1	248 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	TMPRSS5	Q9H3S3	457 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	NRN1	Q9NPD7	142 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907	TMEM167B	Q9NRX6	74 aa		10.14	□□□□□ -0.79
SHKBP1-218	ENST00000598907		K7EQG2	157 aa		10.13	□□□□□ -0.79
SHKBP1-218	ENST00000598907	PSMB3	P49720	205 aa		10.13	□□□□□ -0.79
SHKBP1-218	ENST00000598907	RBPMS2	Q6ZRY4	209 aa	Known RBP	10.13	□□□□□ -0.79
SHKBP1-218	ENST00000598907	SPAG8	Q99932	426 aa	Predicted RBP	10.13	□□□□□ -0.79
SHKBP1-218	ENST00000598907	TRAV8-2	A0A0B4J237	113 aa		10.12	□□□□□ -0.79
SHKBP1-218	ENST00000598907	TEX46	H3BTG2	121 aa		10.12	□□□□□ -0.79
SHKBP1-218	ENST00000598907	SLC17A3	O00476	420 aa		10.12	□□□□□ -0.79
SHKBP1-218	ENST00000598907	SNRPC	P09234	159 aa	Known RBP	10.12	□□□□□ -0.79
SHKBP1-218	ENST00000598907	RPL35A	P18077	110 aa	Known RBP	10.12	□□□□□ -0.79
SHKBP1-218	ENST00000598907	RPL11	P62913	178 aa	Known RBP	10.12	□□□□□ -0.79
SHKBP1-218	ENST00000598907	PAFAH1B2	P68402	229 aa		10.12	□□□□□ -0.79
SHKBP1-218	ENST00000598907	CLLU1	Q5K131	121 aa		10.12	□□□□□ -0.79
SHKBP1-218	ENST00000598907	PCNP	Q8WW12	178 aa	Known RBP	10.12	□□□□□ -0.79
SHKBP1-218	ENST00000598907	ZNF331	Q9NQX6	463 aa	Predicted RBP	10.12	□□□□□ -0.79
SHKBP1-218	ENST00000598907	APOB	P04114	4563 aa	Known RBP	10.11	□□□□□ -0.79
SHKBP1-218	ENST00000598907	IGKV3-7	A0A075B6H7	116 aa		10.11	□□□□□ -0.79
SHKBP1-218	ENST00000598907		H3BTX0	84 aa		10.11	□□□□□ -0.79
SHKBP1-218	ENST00000598907	CDK2AP2	O75956	126 aa		10.11	□□□□□ -0.79
SHKBP1-218	ENST00000598907	RBMY1F	Q15415	496 aa	Known RBP	10.11	□□□□□ -0.79
SHKBP1-218	ENST00000598907	SAMD13	Q5VXD3	122 aa		10.11	□□□□□ -0.79
SHKBP1-218	ENST00000598907		Q8N1X5	172 aa		10.11	□□□□□ -0.79
SHKBP1-218	ENST00000598907	LYPD1	Q8N2G4	141 aa		10.11	□□□□□ -0.79
SHKBP1-218	ENST00000598907	GBGT1	Q8N5D6	347 aa		10.11	□□□□□ -0.79
SHKBP1-218	ENST00000598907	BLNK	Q8WV28	456 aa		10.11	□□□□□ -0.79
SHKBP1-218	ENST00000598907	SLC50A1	Q9BRV3	221 aa		10.11	□□□□□ -0.79
SHKBP1-218	ENST00000598907	SCRT2	Q9NQ03	307 aa		10.11	□□□□□ -0.79
SHKBP1-218	ENST00000598907	ARL2-SNX15	V9GYD0	113 aa		10.11	□□□□□ -0.79
SHKBP1-218	ENST00000598907	LRP1B	Q9NZR2	4599 aa		10.11	□□□□□ -0.79
SHKBP1-218	ENST00000598907		A0A1B0GV50	99 aa		10.1	□□□□□ -0.79
SHKBP1-218	ENST00000598907		A0A1W2PRE2	83 aa		10.1	□□□□□ -0.79
SHKBP1-218	ENST00000598907	C16orf90	A8MZG2	172 aa		10.1	□□□□□ -0.79
SHKBP1-218	ENST00000598907	DNASE2	O00115	360 aa	Predicted RBP	10.1	□□□□□ -0.79
SHKBP1-218	ENST00000598907	UBE2C	O00762	179 aa		10.1	□□□□□ -0.79
SHKBP1-218	ENST00000598907	ISLR	O14498	428 aa		10.1	□□□□□ -0.79
SHKBP1-218	ENST00000598907	DEFB4A	O15263	64 aa		10.1	□□□□□ -0.79
SHKBP1-218	ENST00000598907	PPT1	P50897	306 aa		10.1	□□□□□ -0.79
SHKBP1-218	ENST00000598907	PSG9	Q00887	426 aa		10.1	□□□□□ -0.79
SHKBP1-218	ENST00000598907	FAM24B	Q8N5W8	94 aa		10.1	□□□□□ -0.79
SHKBP1-218	ENST00000598907	OR4C46	A6NHA9	309 aa		10.09	□□□□□ -0.79
SHKBP1-218	ENST00000598907	FAM74A7	A6NL05	159 aa		10.09	□□□□□ -0.79
SHKBP1-218	ENST00000598907	RAB14	P61106	215 aa		10.09	□□□□□ -0.79
SHKBP1-218	ENST00000598907	C16orf92	Q96LL3	132 aa		10.09	□□□□□ -0.79
SHKBP1-218	ENST00000598907	CLEC5A	Q9NY25	188 aa		10.09	□□□□□ -0.79

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