RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ADAMTSL5Q6ZMM2 481 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 TRGV9Q99603 122 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 A0A1B0GUT8 65 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 GAGE12HA6NDE8 117 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 CT45A10P0DMU9 189 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 SH2D6Q7Z4S9 175 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 B5MCH6 92 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 LTAP01374 205 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 FAM106CPP0CH98 169 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 ATP5G2Q06055 141 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 PSG3Q16557 428 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 TMEM30BQ3MIR4 351 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 FAM106AQ4KMX7 169 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 TMEM155Q4W5P6 130 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 MLST8Q9BVC4 326 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 SPG11Q96JI7 2443 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 NCBP2LA6PVI3 153 aaKnown RBP12.11□□□□□ -0.47
UPF1-204ENST00000596842 MYCNOSP40205 109 aa12.11□□□□□ -0.47
UPF1-204ENST00000596842 C8orf49Q96NF6 230 aa12.11□□□□□ -0.47
UPF1-204ENST00000596842 FAM90A27PA6NNH2 459 aa12.11□□□□□ -0.47
UPF1-204ENST00000596842 E7EQL1 145 aa12.11□□□□□ -0.47
UPF1-204ENST00000596842 LIPFP07098 398 aa12.11□□□□□ -0.47
UPF1-204ENST00000596842 SMIM20Q8N5G0 67 aa12.11□□□□□ -0.47
UPF1-204ENST00000596842 DEFB125Q8N687 156 aa12.11□□□□□ -0.47
UPF1-204ENST00000596842 NUP37Q8NFH4 326 aa12.11□□□□□ -0.47
UPF1-204ENST00000596842 TMEM213A2RRL7 107 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 SMKR1H3BMG3 65 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 TIMM23O14925 209 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 IGLC1P0CG04 106 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 PIP4P1Q86T03 277 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 NHP2Q9NX24 153 aaKnown RBP12.1□□□□□ -0.47
UPF1-204ENST00000596842 IGHV3OR16-13A0A075B7E8 117 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 IGHV3-74A0A0B4J1X5 117 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 ANAPC13Q9BS18 74 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 NGBQ9NPG2 151 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 TMEM238LA0A1B0GVL6 79 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 G3V4G9 280 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 IFI27P40305 119 aaPredicted RBP12.1□□□□□ -0.47
UPF1-204ENST00000596842 KLRD1Q13241 179 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 AMTNQ6UX39 209 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 BOD1L2Q8IYS8 172 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 PSG8Q9UQ74 426 aa12.1□□□□□ -0.47
UPF1-204ENST00000596842 HIST1H1AQ02539 215 aaPredicted RBP12.09□□□□□ -0.47
UPF1-204ENST00000596842 FAM162BQ5T6X4 162 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 Q8TAT8 98 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 OTORQ9NRC9 128 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 DOPEY2Q9Y3R5 2298 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 COL12A1Q99715 3063 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 A1L4Q6 167 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 C19orf71A6NCJ1 209 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 FAM120AOSQ5T036 256 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 DPF1Q92782 380 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 C18orf15Q96N68 181 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 SCNM1Q9BWG6 230 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 KLF12Q9Y4X4 402 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 NCR2O95944 276 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 RIGQ13278 110 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 MRGPRG-AS1Q2M3A8 158 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 SAMD5Q5TGI4 173 aa12.09□□□□□ -0.47
UPF1-204ENST00000596842 ZNF418Q8TF45 676 aaPredicted RBP12.09□□□□□ -0.47
UPF1-204ENST00000596842 IGKV2-40A0A087WW87 121 aaPredicted RBP12.08□□□□□ -0.48
UPF1-204ENST00000596842 IGKV2D-40P01614 121 aaPredicted RBP12.08□□□□□ -0.48
UPF1-204ENST00000596842 LOXL1Q08397 574 aaPredicted RBP12.08□□□□□ -0.48
UPF1-204ENST00000596842 FOXE3Q13461 319 aa12.08□□□□□ -0.48
UPF1-204ENST00000596842 AMN1Q8IY45 258 aa12.08□□□□□ -0.48
UPF1-204ENST00000596842 PRSS22Q9GZN4 317 aa12.08□□□□□ -0.48
UPF1-204ENST00000596842 LOC107984156A0A0G2JMH3 177 aa12.08□□□□□ -0.48
UPF1-204ENST00000596842 D6R8Y8 96 aa12.08□□□□□ -0.48
UPF1-204ENST00000596842 BUB1B-PAK6H3BSN5 160 aa12.08□□□□□ -0.48
UPF1-204ENST00000596842 IGKV1-17P01599 117 aa12.08□□□□□ -0.48
UPF1-204ENST00000596842 ASCL5Q7RTU5 278 aa12.08□□□□□ -0.48
UPF1-204ENST00000596842 ARL17AQ8IVW1 177 aa12.08□□□□□ -0.48
UPF1-204ENST00000596842 SPINK8P0C7L1 97 aa12.07□□□□□ -0.48
UPF1-204ENST00000596842 HERV-K104P63124 156 aa12.07□□□□□ -0.48
UPF1-204ENST00000596842 CHCHD1Q96BP2 118 aaKnown RBP12.07□□□□□ -0.48
UPF1-204ENST00000596842 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.07□□□□□ -0.48
UPF1-204ENST00000596842 RNF125Q96EQ8 232 aa12.07□□□□□ -0.48
UPF1-204ENST00000596842 IGHV3-66A0A0C4DH42 116 aa12.07□□□□□ -0.48
UPF1-204ENST00000596842 TEX22C9J3V5 150 aa12.07□□□□□ -0.48
UPF1-204ENST00000596842 AAMDCQ9H7C9 122 aa12.07□□□□□ -0.48
UPF1-204ENST00000596842 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.07□□□□□ -0.487e-7■■■■□ 25.8
UPF1-204ENST00000596842 SMIM13P0DJ93 91 aa12.06□□□□□ -0.48
UPF1-204ENST00000596842 CSN1S1P47710 185 aa12.06□□□□□ -0.48
UPF1-204ENST00000596842 LYZL1Q6UWQ5 148 aa12.06□□□□□ -0.48
UPF1-204ENST00000596842 ARPC1AQ92747 370 aa12.06□□□□□ -0.48
UPF1-204ENST00000596842 CEACAM4O75871 244 aa12.06□□□□□ -0.48
UPF1-204ENST00000596842 CRYGCP07315 174 aa12.06□□□□□ -0.48
UPF1-204ENST00000596842 NPIPB5A8MRT5 1133 aa12.06□□□□□ -0.48
UPF1-204ENST00000596842 TMEM75Q8N9X5 138 aa12.06□□□□□ -0.48
UPF1-204ENST00000596842 NCOR2Q9Y618 2525 aa12.06□□□□□ -0.48
UPF1-204ENST00000596842 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.05□□□□□ -0.48
UPF1-204ENST00000596842 K7ERJ3 54 aa12.05□□□□□ -0.48
UPF1-204ENST00000596842 TWIST1Q15672 202 aa12.05□□□□□ -0.48
UPF1-204ENST00000596842 IGHV3-49A0A0A0MS15 119 aa12.05□□□□□ -0.48
UPF1-204ENST00000596842 TMEM189A5PLL7 270 aa12.05□□□□□ -0.48
UPF1-204ENST00000596842 GRNP28799 593 aaKnown RBP12.05□□□□□ -0.48
UPF1-204ENST00000596842 LINC00311Q8N616 119 aa12.05□□□□□ -0.48
UPF1-204ENST00000596842 TRBV19A0A075B6N1 114 aa12.05□□□□□ -0.48
UPF1-204ENST00000596842 ORM1P02763 201 aa12.05□□□□□ -0.48
UPF1-204ENST00000596842 PRSS1P07477 247 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms