RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 A8MUN3 132 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 PANO1I0J062 215 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 LST1O00453 97 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 NPFFO15130 113 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 LYZL6O75951 148 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 LTAP01374 205 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 IGLC6P0CF74 106 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 LINC00694P0DN24 101 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 FKBP2P26885 142 aaKnown RBP3.22□□□□□ -1.89
SMAD4-216ENST00000593223 ZNF83P51522 516 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 NDUFA6P56556 154 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 LINC00313P59037 77 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 VMA21Q3ZAQ7 101 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 MRPL2Q5T653 305 aaKnown RBP3.22□□□□□ -1.89
SMAD4-216ENST00000593223 BCL2L15Q5TBC7 163 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 C1orf140Q5VVS0 124 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 GTF2H5Q6ZYL4 71 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 MSRB3Q8IXL7 192 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 ZNF709Q8N972 641 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 OR2M3Q8NG83 312 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 OR5H2Q8NGV7 314 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 ERMAPQ96PL5 475 aaPredicted RBP3.22□□□□□ -1.89
SMAD4-216ENST00000593223 MRPL57Q9BQC6 102 aaKnown RBP3.22□□□□□ -1.89
SMAD4-216ENST00000593223 SNHG12Q9BXW3 62 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 TMEM191AQ9H0A3 160 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 TMEM133Q9H2Q1 129 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 TCEAL2Q9H3H9 227 aaPredicted RBP3.22□□□□□ -1.89
SMAD4-216ENST00000593223 TUBA4BQ9H853 241 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 TAC3Q9UHF0 121 aa3.22□□□□□ -1.89
SMAD4-216ENST00000593223 TRRAPQ9Y4A5 3859 aa3.21□□□□□ -1.89
SMAD4-216ENST00000593223 TENM1Q9UKZ4 2725 aa3.21□□□□□ -1.89
SMAD4-216ENST00000593223 MYO18AQ92614 2054 aaKnown RBP3.21□□□□□ -1.89
SMAD4-216ENST00000593223 MYH7P12883 1935 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 IGHV1-45A0A0A0MS14 117 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 TRBV7-6A0A0J9YX20 115 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 A0A0J9YXY3 114 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 IRGMA1A4Y4 181 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 KRTAP4-16G5E9R7 235 aaPredicted RBP3.21□□□□□ -1.9
SMAD4-216ENST00000593223 H0YJW9 148 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 GABARAPH6UMI1 98 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 COX7A2LO14548 114 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 CDC42EP2O14613 210 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 CD5LO43866 347 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 TRGC2P03986 189 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 ZNF728P0DKX0 622 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 MDKP21741 143 aaPredicted RBP3.21□□□□□ -1.9
SMAD4-216ENST00000593223 TMBIM6P55061 237 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 GTF3C1Q12789 2109 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 CCSMST1Q4G0I0 132 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 TMEM244Q5VVB8 128 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 DNAJC24Q6P3W2 148 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 ZNF880Q6PDB4 577 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 SLC25A34Q6PIV7 304 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 TMEM14EPQ6UXP3 125 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 ZNF429Q86V71 674 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 OR8A1Q8NGG7 326 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 SGMS2Q8NHU3 365 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 OR4C12Q96R67 309 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 Q9H521 79 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 LHX9Q9NQ69 397 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 CCDC167Q9P0B6 97 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 CKLFQ9UBR5 152 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 U3KQA8 63 aa3.21□□□□□ -1.9
SMAD4-216ENST00000593223 OBSL1O75147 1896 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 HERC2O95714 4834 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 SONP18583 2426 aaKnown RBP3.2□□□□□ -1.9
SMAD4-216ENST00000593223 PNMA8CA0A1B0GUJ8 204 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 BBIP1A8MTZ0 92 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 LEUTXA8MZ59 168 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 IGLL5B9A064 214 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 NDUFC2-KCTD14E9PQ53 114 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 LY6LH3BQJ8 138 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 C19orf84I3L1E1 186 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 GABARAPO95166 117 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 IGLV2-8P01709 118 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 ZNF705DP0CH99 300 aaPredicted RBP3.2□□□□□ -1.9
SMAD4-216ENST00000593223 CRYGSP22914 178 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 BTG2P78543 158 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 TMEM241Q24JQ0 296 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 RRN3P1Q2M238 152 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 SPANXN3Q5MJ09 141 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 GUSBP11Q6P575 273 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 SNX29P2Q8IUI4 249 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 WFDC11Q8NEX6 87 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 FNDC9Q8TBE3 224 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 RMI2Q96E14 147 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 C1QTNF6Q9BXI9 259 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 OTORQ9NRC9 128 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 ZNF492Q9P255 531 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 IER3IP1Q9Y5U9 82 aa3.2□□□□□ -1.9
SMAD4-216ENST00000593223 ZNF706Q9Y5V0 76 aaPredicted RBP3.2□□□□□ -1.9
SMAD4-216ENST00000593223 TNRC6AQ8NDV7 1962 aaKnown RBP3.2□□□□□ -1.9
SMAD4-216ENST00000593223 HIVEP2P31629 2446 aa3.19□□□□□ -1.9
SMAD4-216ENST00000593223 LOC107984640A0A0U1RRK4 108 aa3.19□□□□□ -1.9
SMAD4-216ENST00000593223 LOC100130705A0A1B0GUX0 176 aa3.19□□□□□ -1.9
SMAD4-216ENST00000593223 SNAPC5O75971 98 aa3.19□□□□□ -1.9
SMAD4-216ENST00000593223 HLA-DQB1P01920 261 aa3.19□□□□□ -1.9
SMAD4-216ENST00000593223 MT-ND4LP03901 98 aa3.19□□□□□ -1.9
SMAD4-216ENST00000593223 SRP19P09132 144 aaKnown RBP3.19□□□□□ -1.9
SMAD4-216ENST00000593223 CRHBPP24387 322 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms