RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 NBEAP1P0C6P0 100 aa8.62□□□□□ -1.03
LIG3-213ENST00000590630 ATP6V0CP27449 155 aa8.62□□□□□ -1.03
LIG3-213ENST00000590630 SERF2P84101 59 aa8.62□□□□□ -1.03
LIG3-213ENST00000590630 ZFAND6Q6FIF0 208 aa8.62□□□□□ -1.03
LIG3-213ENST00000590630 RNF141Q8WVD5 230 aa8.62□□□□□ -1.03
LIG3-213ENST00000590630 FXYD5Q96DB9 178 aa8.62□□□□□ -1.03
LIG3-213ENST00000590630 GNPNAT1Q96EK6 184 aaPredicted RBP8.62□□□□□ -1.03
LIG3-213ENST00000590630 NEU1Q99519 415 aa8.62□□□□□ -1.03
LIG3-213ENST00000590630 PPP1R14DQ9NXH3 145 aa8.62□□□□□ -1.03
LIG3-213ENST00000590630 GOLT1BQ9Y3E0 138 aa8.62□□□□□ -1.03
LIG3-213ENST00000590630 RFNGQ9Y644 331 aa8.62□□□□□ -1.03
LIG3-213ENST00000590630 KMT2CQ8NEZ4 4911 aaKnown RBP8.62□□□□□ -1.03
LIG3-213ENST00000590630 IGHV4-28A0A0C4DH34 117 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 SMLR1H3BR10 107 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 M0R2Z0 102 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 RGS13O14921 159 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 JTBO76095 146 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 MBP02144 154 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 OR10J4P0C629 311 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 RAB2AP61019 212 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 UBE2L3P68036 154 aaKnown RBP8.61□□□□□ -1.03
LIG3-213ENST00000590630 ZNF345Q14585 488 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 SPINK13Q1W4C9 94 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 RPL7L1Q6DKI1 246 aaKnown RBP8.61□□□□□ -1.03
LIG3-213ENST00000590630 PQLC2Q6ZP29 291 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 OR10G4Q8NGN3 311 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 OR10G9Q8NGN4 311 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 OR10G7Q8NGN6 311 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 ZNF503Q96F45 646 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 IGF2BP2-AS1Q96M15 143 aa8.61□□□□□ -1.03
LIG3-213ENST00000590630 HMSDA8MTL9 139 aa8.6□□□□□ -1.03
LIG3-213ENST00000590630 PRAC2D3DTV9 90 aa8.6□□□□□ -1.03
LIG3-213ENST00000590630 DEFB4AO15263 64 aa8.6□□□□□ -1.03
LIG3-213ENST00000590630 INSP01308 110 aa8.6□□□□□ -1.03
LIG3-213ENST00000590630 RBMY1A1P0DJD3 496 aaKnown RBP8.6□□□□□ -1.03
LIG3-213ENST00000590630 RBMY1CP0DJD4 496 aa8.6□□□□□ -1.03
LIG3-213ENST00000590630 RBMY1FQ15415 496 aaKnown RBP8.6□□□□□ -1.03
LIG3-213ENST00000590630 LYPD1Q8N2G4 141 aa8.6□□□□□ -1.03
LIG3-213ENST00000590630 EXOC3-AS1Q8N2X6 119 aa8.6□□□□□ -1.03
LIG3-213ENST00000590630 C11orf45Q8TAV5 145 aa8.6□□□□□ -1.03
LIG3-213ENST00000590630 SH3BGRL3Q9H299 93 aa8.6□□□□□ -1.03
LIG3-213ENST00000590630 IGHV3OR16-12A0A075B7B8 117 aa8.59□□□□□ -1.03
LIG3-213ENST00000590630 TMEM189A5PLL7 270 aa8.59□□□□□ -1.03
LIG3-213ENST00000590630 CXorf65A6NEN9 183 aa8.59□□□□□ -1.03
LIG3-213ENST00000590630 NPIPB6E9PJ23 425 aa8.59□□□□□ -1.03
LIG3-213ENST00000590630 M0R3E3 92 aa8.59□□□□□ -1.03
LIG3-213ENST00000590630 CRXO43186 299 aaPredicted RBP8.59□□□□□ -1.03
LIG3-213ENST00000590630 TSPOP30536 169 aa8.59□□□□□ -1.03
LIG3-213ENST00000590630 CDKN1BP46527 198 aa8.59□□□□□ -1.03
LIG3-213ENST00000590630 CDC34P49427 236 aaPredicted RBP8.59□□□□□ -1.03
LIG3-213ENST00000590630 ICAM4Q14773 271 aa8.59□□□□□ -1.03
LIG3-213ENST00000590630 FAM122CQ6P4D5 195 aa8.59□□□□□ -1.03
LIG3-213ENST00000590630 C1orf158Q8N1D5 194 aa8.59□□□□□ -1.03
LIG3-213ENST00000590630 RPP25LQ8N5L8 163 aaKnown RBP8.59□□□□□ -1.03
LIG3-213ENST00000590630 PHYHIPLQ96FC7 376 aa8.59□□□□□ -1.03
LIG3-213ENST00000590630 ODF3Q96PU9 254 aa8.59□□□□□ -1.03
LIG3-213ENST00000590630 TMEM208Q9BTX3 173 aa8.59□□□□□ -1.03
LIG3-213ENST00000590630 NUPR2A6NF83 97 aa8.58□□□□□ -1.04
LIG3-213ENST00000590630 HBE1P02100 147 aa8.58□□□□□ -1.04
LIG3-213ENST00000590630 PRB4P10163 310 aaPredicted RBP8.58□□□□□ -1.04
LIG3-213ENST00000590630 RANP62826 216 aaKnown RBP8.58□□□□□ -1.04
LIG3-213ENST00000590630 BAP18Q8IXM2 172 aa8.58□□□□□ -1.04
LIG3-213ENST00000590630 TMEM256Q8N2U0 113 aa8.58□□□□□ -1.04
LIG3-213ENST00000590630 KCNRGQ8N5I3 272 aa8.58□□□□□ -1.04
LIG3-213ENST00000590630 OR11H4Q8NGC9 324 aa8.58□□□□□ -1.04
LIG3-213ENST00000590630 TRAV12-2A0A075B6T6 113 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 A0A0D9SG52 128 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 STAG3L2P0CL84 134 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 STAG3L3P0CL85 134 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 ARL14EPLP0DKL9 152 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 LEPP41159 167 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 CSN1S1P47710 185 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 PMS2P11Q13670 270 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 AKAP14Q86UN6 197 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 RAB24Q969Q5 203 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 LINC00477Q96M19 166 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 ARPC5LQ9BPX5 153 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 C20orf144Q9BQM9 153 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 ACTR3CQ9C0K3 210 aaPredicted RBP8.57□□□□□ -1.04
LIG3-213ENST00000590630 Q9H3A6 140 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 CYTL1Q9NRR1 136 aa8.57□□□□□ -1.04
LIG3-213ENST00000590630 HMGB3O15347 200 aaKnown RBP8.56□□□□□ -1.04
LIG3-213ENST00000590630 EIF3GO75821 320 aaKnown RBP eCLIP8.56□□□□□ -1.04
LIG3-213ENST00000590630 CT45A10P0DMU9 189 aa8.56□□□□□ -1.04
LIG3-213ENST00000590630 NANOS2P60321 138 aaKnown RBP8.56□□□□□ -1.04
LIG3-213ENST00000590630 RRN3P1Q2M238 152 aa8.56□□□□□ -1.04
LIG3-213ENST00000590630 FAM74A1Q5RGS3 127 aa8.56□□□□□ -1.04
LIG3-213ENST00000590630 AKR1C8PQ5T2L2 129 aa8.56□□□□□ -1.04
LIG3-213ENST00000590630 C9orf47Q6ZRZ4 202 aa8.56□□□□□ -1.04
LIG3-213ENST00000590630 TCTE3Q8IZS6 198 aa8.56□□□□□ -1.04
LIG3-213ENST00000590630 RXFP4Q8TDU9 374 aa8.56□□□□□ -1.04
LIG3-213ENST00000590630 ST6GAL2Q96JF0 529 aa8.56□□□□□ -1.04
LIG3-213ENST00000590630 LYSTQ99698 3801 aa8.56□□□□□ -1.04
LIG3-213ENST00000590630 OTORQ9NRC9 128 aa8.56□□□□□ -1.04
LIG3-213ENST00000590630 IGKV2-40A0A087WW87 121 aaPredicted RBP8.55□□□□□ -1.04
LIG3-213ENST00000590630 TEX48A0A1B0GUV7 120 aa8.55□□□□□ -1.04
LIG3-213ENST00000590630 LOC102723971A0A1B0GUV8 181 aa8.55□□□□□ -1.04
LIG3-213ENST00000590630 RBAKDNA6NC62 111 aa8.55□□□□□ -1.04
LIG3-213ENST00000590630 BCL2L11O43521 198 aa8.55□□□□□ -1.04
LIG3-213ENST00000590630 CXorf1O96002 111 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms