RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 RAB4BP61018 213 aa3.68□□□□□ -1.82
VMP1-208ENST00000588617 EIF5AL1Q6IS14 154 aaKnown RBP3.68□□□□□ -1.82
VMP1-208ENST00000588617 ZNF826PQ6ZT77 177 aa3.68□□□□□ -1.82
VMP1-208ENST00000588617 C7orf65Q6ZTY9 151 aa3.68□□□□□ -1.82
VMP1-208ENST00000588617 OR9Q1Q8NGQ5 310 aa3.68□□□□□ -1.82
VMP1-208ENST00000588617 ISOC1Q96CN7 298 aa3.68□□□□□ -1.82
VMP1-208ENST00000588617 CCDC115Q96NT0 180 aa3.68□□□□□ -1.82
VMP1-208ENST00000588617 YIPF3Q9GZM5 350 aa3.68□□□□□ -1.82
VMP1-208ENST00000588617 CST9LQ9H4G1 147 aa3.68□□□□□ -1.82
VMP1-208ENST00000588617 BCL2L10Q9HD36 194 aa3.68□□□□□ -1.82
VMP1-208ENST00000588617 TAS2R4Q9NYW5 299 aa3.68□□□□□ -1.82
VMP1-208ENST00000588617 LAMTOR2Q9Y2Q5 125 aa3.68□□□□□ -1.82
VMP1-208ENST00000588617 COL4A4P53420 1690 aaPredicted RBP3.68□□□□□ -1.82
VMP1-208ENST00000588617 RREB1Q92766 1687 aa3.68□□□□□ -1.82
VMP1-208ENST00000588617 RTL9Q8NET4 1388 aa3.67□□□□□ -1.82
VMP1-208ENST00000588617 TRAV3A0A0B4J244 114 aa3.67□□□□□ -1.82
VMP1-208ENST00000588617 TRDV1A0A1B0GX56 115 aa3.67□□□□□ -1.82
VMP1-208ENST00000588617 J3QRE1 110 aa3.67□□□□□ -1.82
VMP1-208ENST00000588617 UBBP0CG47 229 aa3.67□□□□□ -1.82
VMP1-208ENST00000588617 ARPP19P56211 112 aa3.67□□□□□ -1.82
VMP1-208ENST00000588617 MSMO1Q15800 293 aa3.67□□□□□ -1.82
VMP1-208ENST00000588617 C3orf56Q8N813 242 aa3.67□□□□□ -1.82
VMP1-208ENST00000588617 TMEM35BQ8NCS4 154 aa3.67□□□□□ -1.82
VMP1-208ENST00000588617 SLC25A21Q9BQT8 299 aaPredicted RBP3.67□□□□□ -1.82
VMP1-208ENST00000588617 VIRMAQ69YN4 1812 aaKnown RBP3.67□□□□□ -1.82
VMP1-208ENST00000588617 TIMM17BO60830 172 aa3.66□□□□□ -1.82
VMP1-208ENST00000588617 ZNF737O75373 536 aa3.66□□□□□ -1.82
VMP1-208ENST00000588617 C1QCP02747 245 aa3.66□□□□□ -1.82
VMP1-208ENST00000588617 MGST1P10620 155 aaKnown RBP3.66□□□□□ -1.82
VMP1-208ENST00000588617 SCGB1A1P11684 91 aa3.66□□□□□ -1.82
VMP1-208ENST00000588617 SPANXN5Q5MJ07 72 aa3.66□□□□□ -1.82
VMP1-208ENST00000588617 LHFPL6Q9Y693 200 aa3.66□□□□□ -1.82
VMP1-208ENST00000588617 NUP188Q5SRE5 1749 aa3.66□□□□□ -1.82
VMP1-208ENST00000588617 ARFGEF2Q9Y6D5 1785 aa3.66□□□□□ -1.82
VMP1-208ENST00000588617 NHSQ6T4R5 1651 aa3.65□□□□□ -1.82
VMP1-208ENST00000588617 TJP1Q07157 1748 aa3.65□□□□□ -1.82
VMP1-208ENST00000588617 DOT1LQ8TEK3 1739 aa3.65□□□□□ -1.82
VMP1-208ENST00000588617 ZNF609O15014 1411 aa3.65□□□□□ -1.83
VMP1-208ENST00000588617 TRAV1-1A0A0B4J248 108 aa3.65□□□□□ -1.83
VMP1-208ENST00000588617 BCL2P10415 239 aa3.65□□□□□ -1.83
VMP1-208ENST00000588617 HLA-EP13747 358 aa3.65□□□□□ -1.83
VMP1-208ENST00000588617 RPL7P18124 248 aaKnown RBP3.65□□□□□ -1.83
VMP1-208ENST00000588617 S100A11P31949 105 aa3.65□□□□□ -1.83
VMP1-208ENST00000588617 POLR2HP52434 150 aaKnown RBP3.65□□□□□ -1.83
VMP1-208ENST00000588617 PRR15Q8IV56 129 aa3.65□□□□□ -1.83
VMP1-208ENST00000588617 C9orf163Q8N9P6 203 aa3.65□□□□□ -1.83
VMP1-208ENST00000588617 SPACA4Q8TDM5 124 aa3.65□□□□□ -1.83
VMP1-208ENST00000588617 SLC50A1Q9BRV3 221 aa3.65□□□□□ -1.83
VMP1-208ENST00000588617 C6orf62Q9GZU0 229 aaPredicted RBP3.65□□□□□ -1.83
VMP1-208ENST00000588617 OTORQ9NRC9 128 aa3.65□□□□□ -1.83
VMP1-208ENST00000588617 MPDZO75970 2070 aa3.65□□□□□ -1.83
VMP1-208ENST00000588617 LRP5O75197 1615 aa3.65□□□□□ -1.83
VMP1-208ENST00000588617 NCKAP5O14513 1909 aa3.64□□□□□ -1.83
VMP1-208ENST00000588617 ARL5CA6NH57 179 aa3.64□□□□□ -1.83
VMP1-208ENST00000588617 GABARAPH6UMI1 98 aa3.64□□□□□ -1.83
VMP1-208ENST00000588617 H7BYZ3 331 aa3.64□□□□□ -1.83
VMP1-208ENST00000588617 GADD45GO95257 159 aa3.64□□□□□ -1.83
VMP1-208ENST00000588617 ESRGQ1W209 222 aa3.64□□□□□ -1.83
VMP1-208ENST00000588617 ZNF714Q96N38 554 aa3.64□□□□□ -1.83
VMP1-208ENST00000588617 NUP210LQ5VU65 1888 aa3.64□□□□□ -1.83
VMP1-208ENST00000588617 MED23Q9ULK4 1368 aa3.63□□□□□ -1.83
VMP1-208ENST00000588617 CST7O76096 145 aa3.63□□□□□ -1.83
VMP1-208ENST00000588617 HRCT1Q6UXD1 115 aa3.63□□□□□ -1.83
VMP1-208ENST00000588617 KRTAP4-3Q9BYR4 195 aa3.63□□□□□ -1.83
VMP1-208ENST00000588617 SPANXA1Q9NS26 97 aa3.63□□□□□ -1.83
VMP1-208ENST00000588617 TRAPPC2LQ9UL33 140 aa3.63□□□□□ -1.83
VMP1-208ENST00000588617 HS3ST2Q9Y278 367 aa3.63□□□□□ -1.83
VMP1-208ENST00000588617 RNF11Q9Y3C5 154 aa3.63□□□□□ -1.83
VMP1-208ENST00000588617 MED31Q9Y3C7 131 aa3.63□□□□□ -1.83
VMP1-208ENST00000588617 COL5A3P25940 1745 aaPredicted RBP3.63□□□□□ -1.83
VMP1-208ENST00000588617 SPEF2Q9C093 1822 aa3.63□□□□□ -1.83
VMP1-208ENST00000588617 SCN7AQ01118 1682 aa3.62□□□□□ -1.83
VMP1-208ENST00000588617 K7ERJ3 54 aa3.62□□□□□ -1.83
VMP1-208ENST00000588617 CCDC171Q6TFL3 1326 aa3.62□□□□□ -1.83
VMP1-208ENST00000588617 ANKRD36CQ5JPF3 1778 aa3.61□□□□□ -1.83
VMP1-208ENST00000588617 BCORQ6W2J9 1755 aa3.61□□□□□ -1.83
VMP1-208ENST00000588617 A8MWV9 139 aa3.61□□□□□ -1.83
VMP1-208ENST00000588617 ZNF846Q147U1 533 aa3.61□□□□□ -1.83
VMP1-208ENST00000588617 ELOBQ15370 118 aa3.61□□□□□ -1.83
VMP1-208ENST00000588617 RNASE10Q5GAN6 216 aaKnown RBP3.61□□□□□ -1.83
VMP1-208ENST00000588617 ZNF418Q8TF45 676 aaPredicted RBP3.61□□□□□ -1.83
VMP1-208ENST00000588617 ZC2HC1AQ96GY0 325 aa3.61□□□□□ -1.83
VMP1-208ENST00000588617 OR2H1Q9GZK4 316 aa3.61□□□□□ -1.83
VMP1-208ENST00000588617 NAT8BQ9UHF3 227 aa3.61□□□□□ -1.83
VMP1-208ENST00000588617 LY75O60449 1722 aa3.61□□□□□ -1.83
VMP1-208ENST00000588617 TRAV5A0A0B4J249 113 aa3.6□□□□□ -1.83
VMP1-208ENST00000588617 A0A0D9SFI3 127 aa3.6□□□□□ -1.83
VMP1-208ENST00000588617 HIST1H2BKO60814 126 aa3.6□□□□□ -1.83
VMP1-208ENST00000588617 HIST1H2BJP06899 126 aa3.6□□□□□ -1.83
VMP1-208ENST00000588617 OR10J4P0C629 311 aa3.6□□□□□ -1.83
VMP1-208ENST00000588617 BAALC-AS2P0C853 105 aa3.6□□□□□ -1.83
VMP1-208ENST00000588617 RPS3P23396 243 aaKnown RBP eCLIP3.6□□□□□ -1.83
VMP1-208ENST00000588617 HBBP68871 147 aa3.6□□□□□ -1.83
VMP1-208ENST00000588617 EIF3IQ13347 325 aaKnown RBP3.6□□□□□ -1.83
VMP1-208ENST00000588617 LINC00301Q8NCQ3 95 aa3.6□□□□□ -1.83
VMP1-208ENST00000588617 RNASE11Q8TAA1 199 aaKnown RBP3.6□□□□□ -1.83
VMP1-208ENST00000588617 LINC00467Q9BRT7 94 aa3.6□□□□□ -1.83
VMP1-208ENST00000588617 C4BP0C0L5 1744 aa3.6□□□□□ -1.83
VMP1-208ENST00000588617 COL24A1Q17RW2 1714 aa3.6□□□□□ -1.83
VMP1-208ENST00000588617 RGPD3A6NKT7 1758 aaPredicted RBP3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms