RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 GCHFRP30047 84 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 PQLC2Q6ZP29 291 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 BLNKQ8WV28 456 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 GLMPQ8WWB7 406 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 MBD3L1Q8WWY6 194 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 LINC00476Q8WZB0 136 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 FAM167A-AS1Q96KT0 104 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 MCRIP2Q9BUT9 160 aaKnown RBP4.01□□□□□ -1.77
LIG3-210ENST00000588109 TMEM167BQ9NRX6 74 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 TMEM14CQ9P0S9 112 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 GNG13Q9P2W3 67 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 MLXQ9UH92 298 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 TRAV1-1A0A0B4J248 108 aa4□□□□□ -1.77
LIG3-210ENST00000588109 H3BQ15 152 aa4□□□□□ -1.77
LIG3-210ENST00000588109 DNASE2O00115 360 aaPredicted RBP4□□□□□ -1.77
LIG3-210ENST00000588109 NBEAP1P0C6P0 100 aa4□□□□□ -1.77
LIG3-210ENST00000588109 IGLC2P0DOY2 106 aa4□□□□□ -1.77
LIG3-210ENST00000588109 HIST1H1EP10412 219 aaKnown RBP4□□□□□ -1.77
LIG3-210ENST00000588109 GP9P14770 177 aa4□□□□□ -1.77
LIG3-210ENST00000588109 TFPI2P48307 235 aa4□□□□□ -1.77
LIG3-210ENST00000588109 PSMB3P49720 205 aa4□□□□□ -1.77
LIG3-210ENST00000588109 MEOX2P50222 304 aa4□□□□□ -1.77
LIG3-210ENST00000588109 PPT1P50897 306 aa4□□□□□ -1.77
LIG3-210ENST00000588109 UBE2G2P60604 165 aa4□□□□□ -1.77
LIG3-210ENST00000588109 PAFAH1B2P68402 229 aa4□□□□□ -1.77
LIG3-210ENST00000588109 GUCA2BQ16661 112 aa4□□□□□ -1.77
LIG3-210ENST00000588109 GUK1Q16774 197 aa4□□□□□ -1.77
LIG3-210ENST00000588109 HAGHQ16775 308 aa4□□□□□ -1.77
LIG3-210ENST00000588109 CLLU1Q5K131 121 aa4□□□□□ -1.77
LIG3-210ENST00000588109 C9orf66Q5T8R8 295 aa4□□□□□ -1.77
LIG3-210ENST00000588109 GBGT1Q8N5D6 347 aa4□□□□□ -1.77
LIG3-210ENST00000588109 FXYD5Q96DB9 178 aa4□□□□□ -1.77
LIG3-210ENST00000588109 ZNF586Q9NXT0 402 aa4□□□□□ -1.77
LIG3-210ENST00000588109 SIGLEC8Q9NYZ4 499 aa4□□□□□ -1.77
LIG3-210ENST00000588109 FBN1P35555 2871 aaKnown RBP4□□□□□ -1.77
LIG3-210ENST00000588109 TRBV19A0A075B6N1 114 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 A0A087X0K7 114 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 TRAV25A0A0B4J276 109 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 MRPS12O15235 138 aaKnown RBP3.99□□□□□ -1.77
LIG3-210ENST00000588109 IGLL1P15814 213 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 ID1P41134 155 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 INSL3P51460 131 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 RANP62826 216 aaKnown RBP3.99□□□□□ -1.77
LIG3-210ENST00000588109 CCL20P78556 96 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 PSG9Q00887 426 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 FOXI1Q12951 378 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 PDE6HQ13956 83 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 DEFB114Q30KQ6 69 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 SAMD13Q5VXD3 122 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 CST9LP1Q5W188 147 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 LCN12Q6JVE5 192 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 ADAMTSL5Q6ZMM2 481 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 TMEM61Q8N0U2 210 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 CMTM2Q8TAZ6 248 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 C17orf77Q96MU5 243 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 FAM210AQ96ND0 272 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 SLC50A1Q9BRV3 221 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 KRTAP4-5Q9BYR2 181 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 GPR61Q9BZJ8 451 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 EIF5A2Q9GZV4 153 aaKnown RBP3.99□□□□□ -1.77
LIG3-210ENST00000588109 MS4A6AQ9H2W1 248 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 AAMDCQ9H7C9 122 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 NRN1Q9NPD7 142 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 MANBALQ9NQG1 85 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 SMAD5-AS1Q9Y6J3 95 aa3.99□□□□□ -1.77
LIG3-210ENST00000588109 TENM1Q9UKZ4 2725 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 A0A1W2PRE2 83 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 RBFOX3A6NFN3 312 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 OR4C46A6NHA9 309 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 PRSS29PA6NIE9 313 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 C11orf94C9JXX5 98 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 SLC17A3O00476 420 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 ISLRO14498 428 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 TSPAN4O14817 238 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 PAGE4O60829 102 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 IGLV1-51P01701 117 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 BCL2P10415 239 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 TAGLN2P37802 199 aaKnown RBP3.98□□□□□ -1.77
LIG3-210ENST00000588109 CSN1S1P47710 185 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 SNRPD3P62318 126 aaKnown RBP3.98□□□□□ -1.77
LIG3-210ENST00000588109 FAM90A2PQ658T7 463 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 CCDC28AQ8IWP9 274 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 EXOC3-AS1Q8N2X6 119 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 WFDC9Q8NEX5 89 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 OR2K2Q8NGT1 345 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 SPATA3Q8NHX4 192 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 LYPD6BQ8NI32 183 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 LINC00052Q96N35 136 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 SPAG8Q99932 426 aaPredicted RBP3.98□□□□□ -1.77
LIG3-210ENST00000588109 NKX6-2Q9C056 277 aaPredicted RBP3.98□□□□□ -1.77
LIG3-210ENST00000588109 Q9H3A6 140 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 OTORQ9NRC9 128 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 VAX2Q9UIW0 290 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 RPH3ALQ9UNE2 315 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 YTHDF2Q9Y5A9 579 aaKnown RBP3.98□□□□□ -1.77
LIG3-210ENST00000588109 WNK1Q9H4A3 2382 aa3.98□□□□□ -1.77
LIG3-210ENST00000588109 TRAV2A0A0B4J234 112 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 LOC102723971A0A1B0GUV8 181 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 IZUMO1RA6ND01 250 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms