RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 BORCS7Q96B45 105 aa7.87□□□□□ -1.15
VPS53-220ENST00000576149 ASCL2Q99929 193 aa7.87□□□□□ -1.15
VPS53-220ENST00000576149 LPAR2Q9HBW0 351 aa7.87□□□□□ -1.15
VPS53-220ENST00000576149 EREGO14944 169 aa7.86□□□□□ -1.15
VPS53-220ENST00000576149 ID1P41134 155 aa7.86□□□□□ -1.15
VPS53-220ENST00000576149 PSG9Q00887 426 aa7.86□□□□□ -1.15
VPS53-220ENST00000576149 KLK9Q2XQG4 91 aa7.86□□□□□ -1.15
VPS53-220ENST00000576149 PRR31Q5SQ13 230 aa7.86□□□□□ -1.15
VPS53-220ENST00000576149 FAM110DQ8TAY7 271 aaPredicted RBP7.86□□□□□ -1.15
VPS53-220ENST00000576149 URB1-AS1Q96HZ7 61 aa7.86□□□□□ -1.15
VPS53-220ENST00000576149 MIEN1Q9BRT3 115 aa7.86□□□□□ -1.15
VPS53-220ENST00000576149 SNHG12Q9BXW3 62 aa7.86□□□□□ -1.15
VPS53-220ENST00000576149 GEMIN7Q9H840 131 aaKnown RBP7.86□□□□□ -1.15
VPS53-220ENST00000576149 KLK9Q9UKQ9 250 aa7.86□□□□□ -1.15
VPS53-220ENST00000576149 HIVEP3Q5T1R4 2406 aa7.86□□□□□ -1.15
VPS53-220ENST00000576149 FBLL1A6NHQ2 334 aaKnown RBP7.86□□□□□ -1.15
VPS53-220ENST00000576149 SH2D7A6NKC9 451 aaPredicted RBP7.86□□□□□ -1.15
VPS53-220ENST00000576149 PRB4P10163 310 aaPredicted RBP7.86□□□□□ -1.15
VPS53-220ENST00000576149 GNLYP22749 145 aa7.86□□□□□ -1.15
VPS53-220ENST00000576149 RNASEKQ6P5S7 137 aaKnown RBP7.86□□□□□ -1.15
VPS53-220ENST00000576149 NDFIP1Q9BT67 221 aa7.86□□□□□ -1.15
VPS53-220ENST00000576149 LOC102724200A0A096LPH7 203 aaPredicted RBP7.85□□□□□ -1.15
VPS53-220ENST00000576149 M0R2Z0 102 aa7.85□□□□□ -1.15
VPS53-220ENST00000576149 CHEK1O14757 476 aa7.85□□□□□ -1.15
VPS53-220ENST00000576149 CSN1S1P47710 185 aa7.85□□□□□ -1.15
VPS53-220ENST00000576149 FAM162BQ5T6X4 162 aa7.85□□□□□ -1.15
VPS53-220ENST00000576149 UNQ5815/PRO19632Q6UWF5 114 aa7.85□□□□□ -1.15
VPS53-220ENST00000576149 ZNF502Q8TBZ5 544 aa7.85□□□□□ -1.15
VPS53-220ENST00000576149 C1orf43Q9BWL3 253 aa7.85□□□□□ -1.15
VPS53-220ENST00000576149 RABAC1Q9UI14 185 aa7.85□□□□□ -1.15
VPS53-220ENST00000576149 A0A1B0GUT8 65 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 FAM181BA6NEQ2 426 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 M0R143 59 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 NPFFO15130 113 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 ATP6V0E1O15342 81 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 CTRLP40313 264 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 ZNF705AQ6ZN79 300 aaPredicted RBP7.84□□□□□ -1.15
VPS53-220ENST00000576149 FAM110AQ9BQ89 295 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 SMAD5-AS1Q9Y6J3 95 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 CSMD1Q96PZ7 3565 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 SPTBN4Q9H254 2564 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 CENPVL3A0A0U1RRI6 287 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 SRSF2Q01130 221 aaKnown RBP7.84□□□□□ -1.15
VPS53-220ENST00000576149 ECSCRQ19T08 205 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 C15orf32Q32M92 178 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 GATD1Q8NB37 220 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 C8orf49Q96NF6 230 aa7.84□□□□□ -1.15
VPS53-220ENST00000576149 SPTBN1Q01082 2364 aaKnown RBP7.84□□□□□ -1.15
VPS53-220ENST00000576149 ARMS2P0C7Q2 107 aa7.83□□□□□ -1.16
VPS53-220ENST00000576149 CT45A10P0DMU9 189 aa7.83□□□□□ -1.16
VPS53-220ENST00000576149 S100A7P31151 101 aa7.83□□□□□ -1.16
VPS53-220ENST00000576149 RHOGP84095 191 aa7.83□□□□□ -1.16
VPS53-220ENST00000576149 EBLN2Q6P2I7 272 aa7.83□□□□□ -1.16
VPS53-220ENST00000576149 COX8CQ7Z4L0 72 aa7.83□□□□□ -1.16
VPS53-220ENST00000576149 CHCHD1Q96BP2 118 aaKnown RBP7.83□□□□□ -1.16
VPS53-220ENST00000576149 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.83□□□□□ -1.16
VPS53-220ENST00000576149 C2orf70A6NJV1 201 aa7.83□□□□□ -1.16
VPS53-220ENST00000576149 IGHV4-39P01824 125 aa7.83□□□□□ -1.16
VPS53-220ENST00000576149 GPR183P32249 361 aa7.83□□□□□ -1.16
VPS53-220ENST00000576149 RIGQ13278 110 aa7.83□□□□□ -1.16
VPS53-220ENST00000576149 Q6AWC8 147 aa7.83□□□□□ -1.16
VPS53-220ENST00000576149 MRPL52Q86TS9 123 aaKnown RBP7.83□□□□□ -1.16
VPS53-220ENST00000576149 GOLT1BQ9Y3E0 138 aa7.83□□□□□ -1.16
VPS53-220ENST00000576149 IGKV2-40A0A087WW87 121 aaPredicted RBP7.82□□□□□ -1.16
VPS53-220ENST00000576149 M0QZ24 198 aa7.82□□□□□ -1.16
VPS53-220ENST00000576149 IGKV2D-40P01614 121 aaPredicted RBP7.82□□□□□ -1.16
VPS53-220ENST00000576149 SPATA45Q537H7 98 aa7.82□□□□□ -1.16
VPS53-220ENST00000576149 BOD1L2Q8IYS8 172 aa7.82□□□□□ -1.16
VPS53-220ENST00000576149 ZFAND3Q9H8U3 227 aa7.82□□□□□ -1.16
VPS53-220ENST00000576149 IGHV3OR16-8A0A075B7F1 116 aa7.82□□□□□ -1.16
VPS53-220ENST00000576149 IGHV3-35A0A0C4DH35 117 aa7.82□□□□□ -1.16
VPS53-220ENST00000576149 LINC01548A6NM66 108 aa7.82□□□□□ -1.16
VPS53-220ENST00000576149 IGHG4P01861 327 aa7.82□□□□□ -1.16
VPS53-220ENST00000576149 NUTF2P61970 127 aaKnown RBP7.82□□□□□ -1.16
VPS53-220ENST00000576149 PMCHL1Q16048 86 aa7.82□□□□□ -1.16
VPS53-220ENST00000576149 LCN12Q6JVE5 192 aa7.82□□□□□ -1.16
VPS53-220ENST00000576149 PRR25Q96S07 402 aa7.82□□□□□ -1.16
VPS53-220ENST00000576149 WNK2Q9Y3S1 2297 aa7.82□□□□□ -1.16
VPS53-220ENST00000576149 SVEP1Q4LDE5 3571 aa7.82□□□□□ -1.16
VPS53-220ENST00000576149 G3V318 75 aa7.81□□□□□ -1.16
VPS53-220ENST00000576149 M0QZK8 103 aa7.81□□□□□ -1.16
VPS53-220ENST00000576149 RAB9AP51151 201 aa7.81□□□□□ -1.16
VPS53-220ENST00000576149 PAX8Q06710 450 aa7.81□□□□□ -1.16
VPS53-220ENST00000576149 DMRTA1Q5VZB9 504 aa7.81□□□□□ -1.16
VPS53-220ENST00000576149 C5orf56Q8N8D9 126 aa7.81□□□□□ -1.16
VPS53-220ENST00000576149 CCDC140Q96MF4 163 aa7.81□□□□□ -1.16
VPS53-220ENST00000576149 IGHV1-24A0A0C4DH33 117 aa7.81□□□□□ -1.16
VPS53-220ENST00000576149 TMEM189A5PLL7 270 aa7.81□□□□□ -1.16
VPS53-220ENST00000576149 BUB3O43684 328 aa7.81□□□□□ -1.16
VPS53-220ENST00000576149 SH2D1AO60880 128 aa7.81□□□□□ -1.16
VPS53-220ENST00000576149 MED13LQ71F56 2210 aa7.81□□□□□ -1.16
VPS53-220ENST00000576149 A0A087X0K7 114 aa7.8□□□□□ -1.16
VPS53-220ENST00000576149 HLA-DMBP28068 263 aa7.8□□□□□ -1.16
VPS53-220ENST00000576149 HERV-K104P63124 156 aa7.8□□□□□ -1.16
VPS53-220ENST00000576149 IGFL4Q6B9Z1 124 aa7.8□□□□□ -1.16
VPS53-220ENST00000576149 ZNF493Q6ZR52 646 aa7.8□□□□□ -1.16
VPS53-220ENST00000576149 VGLL1Q99990 258 aa7.8□□□□□ -1.16
VPS53-220ENST00000576149 NCOR2Q9Y618 2525 aa7.8□□□□□ -1.16
VPS53-220ENST00000576149 CHD8Q9HCK8 2581 aa7.8□□□□□ -1.16
VPS53-220ENST00000576149 CLPSL1A2RUU4 121 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms