RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 MAP1LC3BQ9GZQ8 125 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 CYSLTR1Q9Y271 337 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 ICOSQ9Y6W8 199 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 HEATR5BQ9P2D3 2071 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 NUP214P35658 2090 aaPredicted RBP3.6□□□□□ -1.83
VPS53-219ENST00000576019 CLDN25C9JDP6 229 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 ATP6V1G2-DDX39BF2Z307 99 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 H3BMM0 161 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 PLA2G10O15496 165 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 ZNF705DP0CH99 300 aaPredicted RBP3.6□□□□□ -1.83
VPS53-219ENST00000576019 TPI1P60174 286 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 SMCO1Q147U7 214 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 OR8G1Q15617 311 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 IBA57Q5T440 356 aaKnown RBP3.6□□□□□ -1.83
VPS53-219ENST00000576019 GLT8D1Q68CQ7 371 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 BRD3OSQ6XYD6 125 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 CLVS1Q8IUQ0 354 aaPredicted RBP3.6□□□□□ -1.83
VPS53-219ENST00000576019 FAM24BQ8N5W8 94 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 ZFAND2AQ8N6M9 145 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 OR13C8Q8NGS7 320 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 GPR119Q8TDV5 335 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 ACOT12Q8WYK0 555 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 HIST1H2BAQ96A08 127 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 UBE2WQ96B02 151 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 PBDC1Q9BVG4 233 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 NKX6-2Q9C056 277 aaPredicted RBP3.6□□□□□ -1.83
VPS53-219ENST00000576019 WDR61Q9GZS3 305 aaKnown RBP3.6□□□□□ -1.83
VPS53-219ENST00000576019 LYRM2Q9NU23 88 aaPredicted RBP3.6□□□□□ -1.83
VPS53-219ENST00000576019 SSR3Q9UNL2 185 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 TMEM56-RWDD3S4R434 201 aa3.6□□□□□ -1.83
VPS53-219ENST00000576019 A0A0B4J2C4 111 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 NUPR2A6NF83 97 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 C9JCJ5 164 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 TRAPPC2LH3BP13 241 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 WISP3O95389 354 aaPredicted RBP3.59□□□□□ -1.83
VPS53-219ENST00000576019 CRYBB3P26998 211 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 CRABP1P29762 137 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 HBA1P69905 142 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 RELAQ04206 551 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 RHEBQ15382 184 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 AMTNQ6UX39 209 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 Q6ZS49 121 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 H1FOOQ8IZA3 346 aaPredicted RBP3.59□□□□□ -1.83
VPS53-219ENST00000576019 OSR2Q8N2R0 312 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 OR5P3Q8WZ94 311 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 ZNF2Q9BSG1 426 aaPredicted RBP3.59□□□□□ -1.83
VPS53-219ENST00000576019 C1QTNF6Q9BXI9 259 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 SH3BGRL3Q9H299 93 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 OR5V1Q9UGF6 321 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 LINC00588Q9Y4M8 146 aa3.59□□□□□ -1.83
VPS53-219ENST00000576019 ZNF860A6NHJ4 632 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 A8MUU9 505 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 H7C1C5 153 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 I3L521 148 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 ARPC5O15511 151 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 SLC25A20O43772 301 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 ORC5O43913 435 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 SH2D1AO60880 128 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 ZNF324O75467 553 aaPredicted RBP3.58□□□□□ -1.84
VPS53-219ENST00000576019 LYZL6O75951 148 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 NDUFC2O95298 119 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 SPI1P17947 270 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 MPV17P39210 176 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 AKR1C2P52895 323 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 TSPEAR-AS2P59090 65 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 LCN6P62502 163 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 RBX1P62877 108 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 RPL30P62888 115 aaKnown RBP3.58□□□□□ -1.84
VPS53-219ENST00000576019 FLI1Q01543 452 aaPredicted RBP3.58□□□□□ -1.84
VPS53-219ENST00000576019 MRPL51Q4U2R6 128 aaKnown RBP3.58□□□□□ -1.84
VPS53-219ENST00000576019 C10orf91Q5T1B1 145 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 TMEM78Q5T7P6 136 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 C12orf45Q8N5I9 185 aaPredicted RBP3.58□□□□□ -1.84
VPS53-219ENST00000576019 UBALD1Q8TB05 177 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 IGF2BP2-AS1Q96M15 143 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 AIF1LQ9BQI0 150 aa3.58□□□□□ -1.84
VPS53-219ENST00000576019 IGKV1OR2-108A0A075B7D4 117 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 UBE2L6O14933 153 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 LECT2O14960 151 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 IL4P05112 153 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 LGALS1P09382 135 aaKnown RBP3.57□□□□□ -1.84
VPS53-219ENST00000576019 PIRTP0C851 137 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 TNXBP22105 4242 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 NPY1RP25929 384 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 ATP6V0CP27449 155 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 RAB13P51153 203 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 TBPL1P62380 186 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 ZNF816Q0VGE8 651 aaPredicted RBP3.57□□□□□ -1.84
VPS53-219ENST00000576019 SURF2Q15527 256 aaPredicted RBP3.57□□□□□ -1.84
VPS53-219ENST00000576019 TMEM128Q5BJH2 165 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 EXOC3-AS1Q8N2X6 119 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 MRPL30Q8TCC3 161 aaKnown RBP3.57□□□□□ -1.84
VPS53-219ENST00000576019 RPS4Y2Q8TD47 263 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 BORCS5Q969J3 196 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 GPR146Q96CH1 333 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 NABP2Q9BQ15 211 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 ACER3Q9NUN7 267 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 HSPB11Q9Y547 144 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 TRAPPC1Q9Y5R8 145 aa3.57□□□□□ -1.84
VPS53-219ENST00000576019 TRAV9-1A0A075B6T8 112 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms