RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 TMEM30CPA0ZSE6 113 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 TMEM213A2RRL7 107 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 MARCH11A6NNE9 402 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 C9JCJ5 164 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 EREGO14944 169 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 RAB29O14966 203 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 MT-CO2P00403 227 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 IGKV1-5P01602 117 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 CDC34P49427 236 aaPredicted RBP8.12□□□□□ -1.11
CDH3-208ENST00000569036 SSBP2P81877 361 aaPredicted RBP8.12□□□□□ -1.11
CDH3-208ENST00000569036 Q0VG73 95 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 ZNF833PQ6ZTB9 187 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 LINC01551Q86U37 167 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 Q8NAQ8 132 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 RPUSD4Q96CM3 377 aaKnown RBP8.12□□□□□ -1.11
CDH3-208ENST00000569036 CSTL1Q9H114 145 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 ZNF581Q9P0T4 197 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 TRAPPC1Q9Y5R8 145 aa8.12□□□□□ -1.11
CDH3-208ENST00000569036 SAA2-SAA4A0A096LPE2 208 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 TRAV25A0A0B4J276 109 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 H3BP45 60 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 IGKV1-39P01597 117 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 IGKV1D-39P04432 117 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 LGALS7P47929 136 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 KRTAP10-2P60368 255 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 ARL16Q0P5N6 197 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 WDR73Q6P4I2 378 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 TRAT1Q6PIZ9 186 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 ZNF497Q6ZNH5 498 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 SSX7Q7RTT5 188 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 CMTM2Q8TAZ6 248 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 NPCDR1Q9BY65 106 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 VSIRQ9H7M9 311 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 PLA2G2DQ9UNK4 145 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 GOLT1BQ9Y3E0 138 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 RFNGQ9Y644 331 aa8.11□□□□□ -1.11
CDH3-208ENST00000569036 DEFB131BA0A096LNP1 70 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.1□□□□□ -1.11
CDH3-208ENST00000569036 PMS2P5A8MQ11 134 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 FNDC10F2Z333 226 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 SCGB1D1O95968 90 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 IAPPP10997 89 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 ADMP35318 185 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 FGF8P55075 233 aaPredicted RBP8.1□□□□□ -1.11
CDH3-208ENST00000569036 ELLP55199 621 aaPredicted RBP8.1□□□□□ -1.11
CDH3-208ENST00000569036 PSG5Q15238 335 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 TMEM30BQ3MIR4 351 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 ZNF585BQ52M93 769 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 SPANXN5Q5MJ07 72 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 FFAR4Q5NUL3 377 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 COL5A1-AS1Q5SY13 56 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 RBPMS2Q6ZRY4 209 aaKnown RBP8.1□□□□□ -1.11
CDH3-208ENST00000569036 OR5B3Q8NH48 314 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 OR52E5Q8NH55 327 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 TMEM37Q8WXS4 190 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 C11orf52Q96A22 123 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 SFRP2Q96HF1 295 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 MDFICQ9P1T7 246 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 WDR83OSQ9Y284 106 aa8.1□□□□□ -1.11
CDH3-208ENST00000569036 C20orf202A1L168 122 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 ZNF320A2RRD8 509 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 SPINT2O43291 252 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 YPEL1O60688 119 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 HPRT1P00492 218 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 IGLV2-14P01704 120 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 SNRPCP09234 159 aaKnown RBP8.09□□□□□ -1.11
CDH3-208ENST00000569036 OR10J4P0C629 311 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 SAA2P0DJI9 122 aaPredicted RBP8.09□□□□□ -1.11
CDH3-208ENST00000569036 AREGP15514 252 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 OPRK1P41145 380 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 RHOGP84095 191 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 PRR18Q8N4B5 295 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 OR1L1Q8NH94 360 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 DTD1Q8TEA8 209 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 YPEL2Q96QA6 119 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 SPAG8Q99932 426 aaPredicted RBP8.09□□□□□ -1.11
CDH3-208ENST00000569036 CHRDL1Q9BU40 450 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 SLC25A22Q9H936 323 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 IL36BQ9NZH7 164 aa8.09□□□□□ -1.11
CDH3-208ENST00000569036 FAM223BA6NKX1 122 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 PAGE4O60829 102 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 CXorf1O96002 111 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 HBZP02008 142 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 ZNF25P17030 456 aaPredicted RBP8.08□□□□□ -1.12
CDH3-208ENST00000569036 XGP55808 180 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 EIF4EBP1Q13541 118 aaPredicted RBP8.08□□□□□ -1.12
CDH3-208ENST00000569036 RTL8BQ17RB0 113 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 MORN2Q502X0 79 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 OR10J3Q5JRS4 329 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 FAM78BQ5VT40 261 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 FAM223AQ8IWN6 122 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 C6orf223Q8N319 242 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 RNF2Q99496 336 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 HSD17B10Q99714 261 aaKnown RBP8.08□□□□□ -1.12
CDH3-208ENST00000569036 VAMP8Q9BV40 100 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 GNB1LQ9BYB4 327 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 ZNF586Q9NXT0 402 aa8.08□□□□□ -1.12
CDH3-208ENST00000569036 RBM7Q9Y580 266 aaKnown RBP8.08□□□□□ -1.12
CDH3-208ENST00000569036 IGHV4-28A0A0C4DH34 117 aa8.07□□□□□ -1.12
CDH3-208ENST00000569036 H0YJW9 148 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms