RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 IGHV3-21A0A0B4J1V1 117 aa10.47□□□□□ -0.73
VPS4A-204ENST00000566354 PSG1P11464 419 aa10.47□□□□□ -0.73
VPS4A-204ENST00000566354 CD24P25063 80 aa10.47□□□□□ -0.73
VPS4A-204ENST00000566354 PRR31Q5SQ13 230 aa10.47□□□□□ -0.73
VPS4A-204ENST00000566354 TMEM191AQ9H0A3 160 aa10.47□□□□□ -0.73
VPS4A-204ENST00000566354 MAP1AP78559 2803 aaPredicted RBP10.47□□□□□ -0.73
VPS4A-204ENST00000566354 PTPN13Q12923 2485 aa10.47□□□□□ -0.73
VPS4A-204ENST00000566354 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.47□□□□□ -0.73
VPS4A-204ENST00000566354 TRBV6-1A0A0K0K1D8 114 aa10.47□□□□□ -0.73
VPS4A-204ENST00000566354 GAGE12BA1L429 117 aa10.47□□□□□ -0.73
VPS4A-204ENST00000566354 APELAP0DMC3 54 aa10.47□□□□□ -0.73
VPS4A-204ENST00000566354 PPP1R27Q86WC6 154 aa10.47□□□□□ -0.73
VPS4A-204ENST00000566354 SLC25A39Q9BZJ4 359 aaPredicted RBP10.47□□□□□ -0.73
VPS4A-204ENST00000566354 IGLV2-11P01706 119 aa10.46□□□□□ -0.73
VPS4A-204ENST00000566354 APOHP02749 345 aaPredicted RBP10.46□□□□□ -0.73
VPS4A-204ENST00000566354 IGLC1P0CG04 106 aa10.46□□□□□ -0.73
VPS4A-204ENST00000566354 HOXB4P17483 251 aaPredicted RBP10.46□□□□□ -0.73
VPS4A-204ENST00000566354 CNTFRP26992 372 aa10.46□□□□□ -0.73
VPS4A-204ENST00000566354 LYZP61626 148 aa10.46□□□□□ -0.73
VPS4A-204ENST00000566354 INSIG2Q9Y5U4 225 aa10.46□□□□□ -0.73
VPS4A-204ENST00000566354 POLQO75417 2590 aa10.46□□□□□ -0.74
VPS4A-204ENST00000566354 CSMD2Q7Z408 3487 aa10.46□□□□□ -0.74
VPS4A-204ENST00000566354 TRAV8-1A0A0A6YYK1 113 aa10.46□□□□□ -0.74
VPS4A-204ENST00000566354 TEX22C9J3V5 150 aa10.46□□□□□ -0.74
VPS4A-204ENST00000566354 J3QKU1 62 aa10.46□□□□□ -0.74
VPS4A-204ENST00000566354 IGLV1-47P01700 117 aa10.46□□□□□ -0.74
VPS4A-204ENST00000566354 LINC00173Q6ZV60 143 aa10.46□□□□□ -0.74
VPS4A-204ENST00000566354 CIARTQ8N365 385 aaPredicted RBP10.46□□□□□ -0.74
VPS4A-204ENST00000566354 MRAP2Q96G30 205 aa10.46□□□□□ -0.74
VPS4A-204ENST00000566354 MAP1LC3CQ9BXW4 147 aa10.46□□□□□ -0.74
VPS4A-204ENST00000566354 ABCA12Q86UK0 2595 aa10.46□□□□□ -0.74
VPS4A-204ENST00000566354 GOLT1AQ6ZVE7 132 aa10.45□□□□□ -0.74
VPS4A-204ENST00000566354 PRNTQ86SH4 94 aa10.45□□□□□ -0.74
VPS4A-204ENST00000566354 FER1L6-AS1Q8NA97 138 aa10.45□□□□□ -0.74
VPS4A-204ENST00000566354 HIF1ANQ9NWT6 349 aa10.45□□□□□ -0.74
VPS4A-204ENST00000566354 HSPB8Q9UJY1 196 aa10.45□□□□□ -0.74
VPS4A-204ENST00000566354 GCN1Q92616 2671 aaKnown RBP10.45□□□□□ -0.74
VPS4A-204ENST00000566354 IGHV1-3A0A0C4DH29 117 aa10.45□□□□□ -0.74
VPS4A-204ENST00000566354 Q6ZVH6 145 aa10.45□□□□□ -0.74
VPS4A-204ENST00000566354 EXOC3-AS1Q8N2X6 119 aa10.45□□□□□ -0.74
VPS4A-204ENST00000566354 NEU4Q8WWR8 484 aaPredicted RBP10.45□□□□□ -0.74
VPS4A-204ENST00000566354 RASL11BQ9BPW5 248 aa10.45□□□□□ -0.74
VPS4A-204ENST00000566354 A0A1B0GUT8 65 aa10.44□□□□□ -0.74
VPS4A-204ENST00000566354 I3L2K1 104 aa10.44□□□□□ -0.74
VPS4A-204ENST00000566354 COX6B1P14854 86 aa10.44□□□□□ -0.74
VPS4A-204ENST00000566354 HTR1DP28221 377 aa10.44□□□□□ -0.74
VPS4A-204ENST00000566354 MALRD1Q5VYJ5 2156 aa10.44□□□□□ -0.74
VPS4A-204ENST00000566354 SLC25A34Q6PIV7 304 aa10.44□□□□□ -0.74
VPS4A-204ENST00000566354 VPS13CQ709C8 3753 aa10.44□□□□□ -0.74
VPS4A-204ENST00000566354 MED13LQ71F56 2210 aa10.44□□□□□ -0.74
VPS4A-204ENST00000566354 hDV102S1A0JD36 115 aa10.44□□□□□ -0.74
VPS4A-204ENST00000566354 BUB1B-PAK6H3BSN5 160 aa10.44□□□□□ -0.74
VPS4A-204ENST00000566354 RIGQ13278 110 aa10.44□□□□□ -0.74
VPS4A-204ENST00000566354 SRSF12Q8WXF0 261 aaKnown RBP10.44□□□□□ -0.74
VPS4A-204ENST00000566354 A0A1B0GW15 77 aa10.43□□□□□ -0.74
VPS4A-204ENST00000566354 OVOL3O00110 214 aa10.43□□□□□ -0.74
VPS4A-204ENST00000566354 RBP4P02753 201 aa10.43□□□□□ -0.74
VPS4A-204ENST00000566354 ARL3P36405 182 aa10.43□□□□□ -0.74
VPS4A-204ENST00000566354 MPV17L2Q567V2 206 aa10.43□□□□□ -0.74
VPS4A-204ENST00000566354 BPIFA4PQ86YQ2 179 aa10.43□□□□□ -0.74
VPS4A-204ENST00000566354 TMEM75Q8N9X5 138 aa10.43□□□□□ -0.74
VPS4A-204ENST00000566354 RAX2Q96IS3 184 aa10.43□□□□□ -0.74
VPS4A-204ENST00000566354 RNF5Q99942 180 aa10.43□□□□□ -0.74
VPS4A-204ENST00000566354 MS4A6AQ9H2W1 248 aa10.43□□□□□ -0.74
VPS4A-204ENST00000566354 TRBV19A0A075B6N1 114 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 K7EQM0 130 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 GNG7O60262 68 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 ZNF138P52744 262 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 LYPD1Q8N2G4 141 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 GATD1Q8NB37 220 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 IGFBPL1Q8WX77 278 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 NRGNQ92686 78 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 SRSF8Q9BRL6 282 aaKnown RBP10.42□□□□□ -0.74
VPS4A-204ENST00000566354 TRBV7-9A0A0J9YWB2 115 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 ZNF785A8K8V0 405 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 IGKV1-17P01599 117 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 C12orf54Q6X4T0 127 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 ZC2HC1AQ96GY0 325 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 SHANK2-AS3Q9BTD1 123 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 FBXL15Q9H469 300 aa10.42□□□□□ -0.74
VPS4A-204ENST00000566354 FASNP49327 2511 aaKnown RBP10.41□□□□□ -0.74
VPS4A-204ENST00000566354 NUDT3O95989 172 aa10.41□□□□□ -0.74
VPS4A-204ENST00000566354 HLA-DRB1P01911 266 aa10.41□□□□□ -0.74
VPS4A-204ENST00000566354 Q6AWC8 147 aa10.41□□□□□ -0.74
VPS4A-204ENST00000566354 CCDC144NLQ6NUI1 221 aa10.41□□□□□ -0.74
VPS4A-204ENST00000566354 NEGR1Q7Z3B1 354 aa10.41□□□□□ -0.74
VPS4A-204ENST00000566354 SCRT2Q9NQ03 307 aa10.41□□□□□ -0.74
VPS4A-204ENST00000566354 AP5S1Q9NUS5 200 aa10.41□□□□□ -0.74
VPS4A-204ENST00000566354 ARHGAP32A7KAX9 2087 aa10.41□□□□□ -0.74
VPS4A-204ENST00000566354 AZU1P20160 251 aa10.41□□□□□ -0.74
VPS4A-204ENST00000566354 EFNA4P52798 201 aa10.41□□□□□ -0.74
VPS4A-204ENST00000566354 LINC01545Q5VT33 79 aa10.41□□□□□ -0.74
VPS4A-204ENST00000566354 RPEQ96AT9 228 aa10.41□□□□□ -0.74
VPS4A-204ENST00000566354 CCL19Q99731 98 aa10.41□□□□□ -0.74
VPS4A-204ENST00000566354 NBPF19A0A087WUL8 3843 aa10.41□□□□□ -0.74
VPS4A-204ENST00000566354 ANKRD17O75179 2603 aaKnown RBP10.4□□□□□ -0.74
VPS4A-204ENST00000566354 CSN3P07498 182 aa10.4□□□□□ -0.74
VPS4A-204ENST00000566354 ARMS2P0C7Q2 107 aa10.4□□□□□ -0.74
VPS4A-204ENST00000566354 PLGLAQ15195 96 aa10.4□□□□□ -0.74
VPS4A-204ENST00000566354 BVES-AS1Q5T3Y7 98 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms