RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 TRAV5A0A0B4J249 113 aa10.96□□□□□ -0.65
CLK3-211ENST00000563297 CAMLGP49069 296 aa10.96□□□□□ -0.65
CLK3-211ENST00000563297 OR5I1Q13606 314 aa10.96□□□□□ -0.65
CLK3-211ENST00000563297 CLINT1Q14677 625 aa10.96□□□□□ -0.65
CLK3-211ENST00000563297 ZNF846Q147U1 533 aa10.96□□□□□ -0.65
CLK3-211ENST00000563297 MIC13Q5XKP0 118 aa10.96□□□□□ -0.65
CLK3-211ENST00000563297 SSX7Q7RTT5 188 aa10.96□□□□□ -0.65
CLK3-211ENST00000563297 NRARPQ7Z6K4 114 aa10.96□□□□□ -0.65
CLK3-211ENST00000563297 CCDC28AQ8IWP9 274 aa10.96□□□□□ -0.65
CLK3-211ENST00000563297 C20orf85Q9H1P6 137 aa10.96□□□□□ -0.65
CLK3-211ENST00000563297 C11orf1Q9H5F2 150 aa10.96□□□□□ -0.65
CLK3-211ENST00000563297 LSM5Q9Y4Y9 91 aaKnown RBP10.96□□□□□ -0.65
CLK3-211ENST00000563297 PXMP4Q9Y6I8 212 aa10.96□□□□□ -0.65
CLK3-211ENST00000563297 FAM24AA6NFZ4 105 aa10.95□□□□□ -0.66
CLK3-211ENST00000563297 CST7O76096 145 aa10.95□□□□□ -0.66
CLK3-211ENST00000563297 CT45A10P0DMU9 189 aa10.95□□□□□ -0.66
CLK3-211ENST00000563297 BCAP31P51572 246 aa10.95□□□□□ -0.66
CLK3-211ENST00000563297 RAB31Q13636 194 aa10.95□□□□□ -0.66
CLK3-211ENST00000563297 Q6ZRG5 221 aa10.95□□□□□ -0.66
CLK3-211ENST00000563297 Q9H8V8 135 aa10.95□□□□□ -0.66
CLK3-211ENST00000563297 ABCA13Q86UQ4 5058 aa10.95□□□□□ -0.66
CLK3-211ENST00000563297 TRAV26-1A0A087WT03 109 aa10.94□□□□□ -0.66
CLK3-211ENST00000563297 GAGE12BA1L429 117 aa10.94□□□□□ -0.66
CLK3-211ENST00000563297 FAM25EA8MYX2 175 aa10.94□□□□□ -0.66
CLK3-211ENST00000563297 J3KRW8 73 aa10.94□□□□□ -0.66
CLK3-211ENST00000563297 GAGE7O76087 117 aa10.94□□□□□ -0.66
CLK3-211ENST00000563297 TCRBP04435 133 aa10.94□□□□□ -0.66
CLK3-211ENST00000563297 GAGE12FP0CL80 117 aa10.94□□□□□ -0.66
CLK3-211ENST00000563297 GAGE12GP0CL81 117 aa10.94□□□□□ -0.66
CLK3-211ENST00000563297 GAGE12IP0CL82 117 aa10.94□□□□□ -0.66
CLK3-211ENST00000563297 GUK1Q16774 197 aa10.94□□□□□ -0.66
CLK3-211ENST00000563297 RXFP4Q8TDU9 374 aa10.94□□□□□ -0.66
CLK3-211ENST00000563297 ZNF431Q8TF32 576 aaPredicted RBP10.94□□□□□ -0.66
CLK3-211ENST00000563297 GNPNAT1Q96EK6 184 aaPredicted RBP10.94□□□□□ -0.66
CLK3-211ENST00000563297 ZNF586Q9NXT0 402 aa10.94□□□□□ -0.66
CLK3-211ENST00000563297 WDR83OSQ9Y284 106 aa10.94□□□□□ -0.66
CLK3-211ENST00000563297 TRAV12-3A0A0B4J271 114 aa10.93□□□□□ -0.66
CLK3-211ENST00000563297 C5orf51A6NDU8 294 aa10.93□□□□□ -0.66
CLK3-211ENST00000563297 C16orf90A8MZG2 172 aa10.93□□□□□ -0.66
CLK3-211ENST00000563297 NPIPB6E9PJ23 425 aa10.93□□□□□ -0.66
CLK3-211ENST00000563297 LYRM1O43325 122 aa10.93□□□□□ -0.66
CLK3-211ENST00000563297 M6PRP20645 277 aa10.93□□□□□ -0.66
CLK3-211ENST00000563297 HOXA5P20719 270 aa10.93□□□□□ -0.66
CLK3-211ENST00000563297 CAV2P51636 162 aa10.93□□□□□ -0.66
CLK3-211ENST00000563297 OR1L4Q8NGR5 311 aa10.93□□□□□ -0.66
CLK3-211ENST00000563297 ZNF503Q96F45 646 aa10.93□□□□□ -0.66
CLK3-211ENST00000563297 C2orf50Q96LR7 162 aa10.93□□□□□ -0.66
CLK3-211ENST00000563297 ODF3Q96PU9 254 aa10.93□□□□□ -0.66
CLK3-211ENST00000563297 SEC22CQ9BRL7 303 aa10.93□□□□□ -0.66
CLK3-211ENST00000563297 HSPG2P98160 4391 aa10.92□□□□□ -0.66
CLK3-211ENST00000563297 TRAV6A0A075B6T7 132 aa10.92□□□□□ -0.66
CLK3-211ENST00000563297 A0A0J9YY99 117 aa10.92□□□□□ -0.66
CLK3-211ENST00000563297 SNURFLB1AK76 121 aa10.92□□□□□ -0.66
CLK3-211ENST00000563297 RLN2P04090 185 aa10.92□□□□□ -0.66
CLK3-211ENST00000563297 LEPP41159 167 aa10.92□□□□□ -0.66
CLK3-211ENST00000563297 RPL29P47914 159 aaKnown RBP10.92□□□□□ -0.66
CLK3-211ENST00000563297 ESRGQ1W209 222 aa10.92□□□□□ -0.66
CLK3-211ENST00000563297 VWC2Q2TAL6 325 aa10.92□□□□□ -0.66
CLK3-211ENST00000563297 PYGO2Q9BRQ0 406 aa10.92□□□□□ -0.66
CLK3-211ENST00000563297 UQCC1Q9NVA1 299 aa10.92□□□□□ -0.66
CLK3-211ENST00000563297 DAZ2Q13117 558 aaKnown RBP10.91□□□□□ -0.66
CLK3-211ENST00000563297 IL15RAQ13261 267 aa10.91□□□□□ -0.66
CLK3-211ENST00000563297 C12orf45Q8N5I9 185 aaPredicted RBP10.91□□□□□ -0.66
CLK3-211ENST00000563297 CHAC2Q8WUX2 184 aa10.91□□□□□ -0.66
CLK3-211ENST00000563297 PFDN5Q99471 154 aa10.91□□□□□ -0.66
CLK3-211ENST00000563297 SLC39A9Q9NUM3 307 aa10.91□□□□□ -0.66
CLK3-211ENST00000563297 LRP1BQ9NZR2 4599 aa10.91□□□□□ -0.66
CLK3-211ENST00000563297 TRBV19A0A075B6N1 114 aa10.9□□□□□ -0.66
CLK3-211ENST00000563297 H3BNG1 76 aa10.9□□□□□ -0.66
CLK3-211ENST00000563297 M0R3E3 92 aa10.9□□□□□ -0.66
CLK3-211ENST00000563297 ZNF253O75346 499 aa10.9□□□□□ -0.66
CLK3-211ENST00000563297 PVALBP20472 110 aaPredicted RBP10.9□□□□□ -0.66
CLK3-211ENST00000563297 S100A11P31949 105 aa10.9□□□□□ -0.66
CLK3-211ENST00000563297 SULT1A1P50225 295 aa10.9□□□□□ -0.66
CLK3-211ENST00000563297 ERCC8Q13216 396 aa10.9□□□□□ -0.66
CLK3-211ENST00000563297 TMEM252Q8N6L7 170 aa10.9□□□□□ -0.66
CLK3-211ENST00000563297 KRTAP1-5Q9BYS1 174 aa10.9□□□□□ -0.66
CLK3-211ENST00000563297 LYRM2Q9NU23 88 aaPredicted RBP10.9□□□□□ -0.66
CLK3-211ENST00000563297 NUDT15Q9NV35 164 aa10.9□□□□□ -0.66
CLK3-211ENST00000563297 IGSF23A1L1A6 192 aa10.89□□□□□ -0.67
CLK3-211ENST00000563297 CDK2AP2O75956 126 aa10.89□□□□□ -0.67
CLK3-211ENST00000563297 NDUFB4O95168 129 aa10.89□□□□□ -0.67
CLK3-211ENST00000563297 SLC25A5P05141 298 aaKnown RBP10.89□□□□□ -0.67
CLK3-211ENST00000563297 BAXQ07812 192 aa10.89□□□□□ -0.67
CLK3-211ENST00000563297 Q6ZTI0 123 aa10.89□□□□□ -0.67
CLK3-211ENST00000563297 MRPL53Q96EL3 112 aaKnown RBP10.89□□□□□ -0.67
CLK3-211ENST00000563297 UPK3BQ9BT76 320 aa10.89□□□□□ -0.67
CLK3-211ENST00000563297 TMPRSS5Q9H3S3 457 aa10.89□□□□□ -0.67
CLK3-211ENST00000563297 TMEM14CQ9P0S9 112 aa10.89□□□□□ -0.67
CLK3-211ENST00000563297 UBE2L5PA0A1B0GUS4 154 aa10.88□□□□□ -0.67
CLK3-211ENST00000563297 ZNF324O75467 553 aaPredicted RBP10.88□□□□□ -0.67
CLK3-211ENST00000563297 H2AFB2P0C5Z0 115 aa10.88□□□□□ -0.67
CLK3-211ENST00000563297 HIST1H1EP10412 219 aaKnown RBP10.88□□□□□ -0.67
CLK3-211ENST00000563297 S100A10P60903 97 aa10.88□□□□□ -0.67
CLK3-211ENST00000563297 RAB32Q13637 225 aa10.88□□□□□ -0.67
CLK3-211ENST00000563297 FAM19A4Q96LR4 140 aa10.88□□□□□ -0.67
CLK3-211ENST00000563297 LINC00477Q96M19 166 aa10.88□□□□□ -0.67
CLK3-211ENST00000563297 AGPAT4-IT1Q9H0P7 198 aa10.88□□□□□ -0.67
CLK3-211ENST00000563297 Q9H3A6 140 aa10.88□□□□□ -0.67
CLK3-211ENST00000563297 PRELID1Q9Y255 219 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms