RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 TMEM37Q8WXS4 190 aa8.12□□□□□ -1.11
USP3-214ENST00000559718 MGST2Q99735 147 aa8.12□□□□□ -1.11
USP3-214ENST00000559718 TIMM8BQ9Y5J9 83 aaPredicted RBP8.12□□□□□ -1.11
USP3-214ENST00000559718 HSPG2P98160 4391 aa8.12□□□□□ -1.11
USP3-214ENST00000559718 H3BQ15 152 aa8.11□□□□□ -1.11
USP3-214ENST00000559718 CXCL2P19875 107 aa8.11□□□□□ -1.11
USP3-214ENST00000559718 OPCMLQ14982 345 aa8.11□□□□□ -1.11
USP3-214ENST00000559718 PXDC1Q5TGL8 231 aa8.11□□□□□ -1.11
USP3-214ENST00000559718 GFI1BQ5VTD9 330 aa8.11□□□□□ -1.11
USP3-214ENST00000559718 LCN15Q6UWW0 184 aa8.11□□□□□ -1.11
USP3-214ENST00000559718 S100A7AQ86SG5 101 aa8.11□□□□□ -1.11
USP3-214ENST00000559718 ZNF546Q86UE3 836 aa8.11□□□□□ -1.11
USP3-214ENST00000559718 TMEM263Q8WUH6 116 aaKnown RBP8.11□□□□□ -1.11
USP3-214ENST00000559718 LRP1BQ9NZR2 4599 aa8.1□□□□□ -1.11
USP3-214ENST00000559718 TRAV5A0A0B4J249 113 aa8.1□□□□□ -1.11
USP3-214ENST00000559718 C16orf90A8MZG2 172 aa8.1□□□□□ -1.11
USP3-214ENST00000559718 H7BYZ3 331 aa8.1□□□□□ -1.11
USP3-214ENST00000559718 J3KRW8 73 aa8.1□□□□□ -1.11
USP3-214ENST00000559718 COX7A2P2O60397 106 aa8.1□□□□□ -1.11
USP3-214ENST00000559718 IGLC2P0DOY2 106 aa8.1□□□□□ -1.11
USP3-214ENST00000559718 CCL18P55774 89 aa8.1□□□□□ -1.11
USP3-214ENST00000559718 ZNF493Q6ZR52 646 aa8.1□□□□□ -1.11
USP3-214ENST00000559718 SSX7Q7RTT5 188 aa8.1□□□□□ -1.11
USP3-214ENST00000559718 BPIFA4PQ86YQ2 179 aa8.1□□□□□ -1.11
USP3-214ENST00000559718 C6orf223Q8N319 242 aa8.1□□□□□ -1.11
USP3-214ENST00000559718 SLC50A1Q9BRV3 221 aa8.1□□□□□ -1.11
USP3-214ENST00000559718 TRAV26-1A0A087WT03 109 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 A0A0J9YY99 117 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 CENPXA8MT69 81 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 ZNF701M0R085 212 aaPredicted RBP8.09□□□□□ -1.11
USP3-214ENST00000559718 PLA2G10O15496 165 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 CST7O76096 145 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 CT45A10P0DMU9 189 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 IL7P13232 177 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 HOXA5P20719 270 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 OR5I1Q13606 314 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 CLINT1Q14677 625 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 C10orf113Q5VZT2 155 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 MIC13Q5XKP0 118 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 LINC00612Q8N6U2 182 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 OR10J6PQ8NGY7 276 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 SAT2Q96F10 170 aaPredicted RBP8.09□□□□□ -1.11
USP3-214ENST00000559718 GGACTQ9BVM4 153 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 C20orf85Q9H1P6 137 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 RNF24Q9Y225 148 aa8.09□□□□□ -1.11
USP3-214ENST00000559718 LSM5Q9Y4Y9 91 aaKnown RBP8.09□□□□□ -1.11
USP3-214ENST00000559718 GAGE12BA1L429 117 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 FAM24AA6NFZ4 105 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 FAM25EA8MYX2 175 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 L7N2F9 121 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 GAGE7O76087 117 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 GAGE12FP0CL80 117 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 GAGE12GP0CL81 117 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 GAGE12IP0CL82 117 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 CAMLGP49069 296 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 BCAP31P51572 246 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 VAMP2P63027 116 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 NRARPQ7Z6K4 114 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 GNPNAT1Q96EK6 184 aaPredicted RBP8.08□□□□□ -1.12
USP3-214ENST00000559718 C20orf144Q9BQM9 153 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 SEC22CQ9BRL7 303 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 KRTAP1-5Q9BYS1 174 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 C11orf1Q9H5F2 150 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 DNAJC4Q9NNZ3 241 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 ZNF586Q9NXT0 402 aa8.08□□□□□ -1.12
USP3-214ENST00000559718 TRAV12-3A0A0B4J271 114 aa8.07□□□□□ -1.12
USP3-214ENST00000559718 M6PRP20645 277 aa8.07□□□□□ -1.12
USP3-214ENST00000559718 CAV2P51636 162 aa8.07□□□□□ -1.12
USP3-214ENST00000559718 CCDC28AQ8IWP9 274 aa8.07□□□□□ -1.12
USP3-214ENST00000559718 RXFP4Q8TDU9 374 aa8.07□□□□□ -1.12
USP3-214ENST00000559718 ZNF431Q8TF32 576 aaPredicted RBP8.07□□□□□ -1.12
USP3-214ENST00000559718 Q9H8V8 135 aa8.07□□□□□ -1.12
USP3-214ENST00000559718 PXMP4Q9Y6I8 212 aa8.07□□□□□ -1.12
USP3-214ENST00000559718 TRAV6A0A075B6T7 132 aa8.06□□□□□ -1.12
USP3-214ENST00000559718 C5orf51A6NDU8 294 aa8.06□□□□□ -1.12
USP3-214ENST00000559718 NPIPB6E9PJ23 425 aa8.06□□□□□ -1.12
USP3-214ENST00000559718 M0R3E3 92 aa8.06□□□□□ -1.12
USP3-214ENST00000559718 LYRM1O43325 122 aa8.06□□□□□ -1.12
USP3-214ENST00000559718 RLN2P04090 185 aa8.06□□□□□ -1.12
USP3-214ENST00000559718 ERCC8Q13216 396 aa8.06□□□□□ -1.12
USP3-214ENST00000559718 ZNF846Q147U1 533 aa8.06□□□□□ -1.12
USP3-214ENST00000559718 ESRGQ1W209 222 aa8.06□□□□□ -1.12
USP3-214ENST00000559718 Q6ZRG5 221 aa8.06□□□□□ -1.12
USP3-214ENST00000559718 TMPRSS5Q9H3S3 457 aa8.06□□□□□ -1.12
USP3-214ENST00000559718 UQCC1Q9NVA1 299 aa8.06□□□□□ -1.12
USP3-214ENST00000559718 WDR83OSQ9Y284 106 aa8.06□□□□□ -1.12
USP3-214ENST00000559718 UBE2L5PA0A1B0GUS4 154 aa8.05□□□□□ -1.12
USP3-214ENST00000559718 IGSF23A1L1A6 192 aa8.05□□□□□ -1.12
USP3-214ENST00000559718 SNURFLB1AK76 121 aa8.05□□□□□ -1.12
USP3-214ENST00000559718 EIF4EBP3O60516 100 aaPredicted RBP8.05□□□□□ -1.12
USP3-214ENST00000559718 TCRBP04435 133 aa8.05□□□□□ -1.12
USP3-214ENST00000559718 LEPP41159 167 aa8.05□□□□□ -1.12
USP3-214ENST00000559718 RAB31Q13636 194 aa8.05□□□□□ -1.12
USP3-214ENST00000559718 VWC2Q2TAL6 325 aa8.05□□□□□ -1.12
USP3-214ENST00000559718 CNPY1Q3B7I2 92 aa8.05□□□□□ -1.12
USP3-214ENST00000559718 Q6ZTI0 123 aa8.05□□□□□ -1.12
USP3-214ENST00000559718 SLC39A9Q9NUM3 307 aa8.05□□□□□ -1.12
USP3-214ENST00000559718 NUDT15Q9NV35 164 aa8.05□□□□□ -1.12
USP3-214ENST00000559718 CDK2AP2O75956 126 aa8.04□□□□□ -1.12
USP3-214ENST00000559718 NDUFB4O95168 129 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms