RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 KLF17Q5JT82 389 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-206ENST00000558338 ZNF705AQ6ZN79 300 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-206ENST00000558338 COX8CQ7Z4L0 72 aa5.68□□□□□ -1.5
VPS13C-206ENST00000558338 DYNAPQ8N1N2 210 aa5.68□□□□□ -1.5
VPS13C-206ENST00000558338 ITLN2Q8WWU7 325 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-206ENST00000558338 SSBP4Q9BWG4 385 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-206ENST00000558338 LOC102724200A0A096LPH7 203 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-206ENST00000558338 A0A1B0GV90 55 aa5.68□□□□□ -1.5
VPS13C-206ENST00000558338 VWC2LB2RUY7 222 aa5.68□□□□□ -1.5
VPS13C-206ENST00000558338 F8WDY8 70 aa5.68□□□□□ -1.5
VPS13C-206ENST00000558338 NDUFS8O00217 210 aa5.68□□□□□ -1.5
VPS13C-206ENST00000558338 OR5AL1P0C617 328 aa5.68□□□□□ -1.5
VPS13C-206ENST00000558338 SPATA45Q537H7 98 aa5.68□□□□□ -1.5
VPS13C-206ENST00000558338 UNQ5815/PRO19632Q6UWF5 114 aa5.68□□□□□ -1.5
VPS13C-206ENST00000558338 KRTAP19-1Q8IUB9 90 aa5.68□□□□□ -1.5
VPS13C-206ENST00000558338 Q8N976 141 aa5.68□□□□□ -1.5
VPS13C-206ENST00000558338 UQCR10Q9UDW1 63 aa5.68□□□□□ -1.5
VPS13C-206ENST00000558338 PTPRZ1P23471 2315 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-206ENST00000558338 ATMQ13315 3056 aa5.67□□□□□ -1.5
VPS13C-206ENST00000558338 A0A087X0K7 114 aa5.67□□□□□ -1.5
VPS13C-206ENST00000558338 OR2T8A6NH00 312 aa5.67□□□□□ -1.5
VPS13C-206ENST00000558338 NPFFO15130 113 aa5.67□□□□□ -1.5
VPS13C-206ENST00000558338 APOHP02749 345 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-206ENST00000558338 EGR2P11161 476 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-206ENST00000558338 BMI1P35226 326 aa5.67□□□□□ -1.5
VPS13C-206ENST00000558338 SAA4P35542 130 aa5.67□□□□□ -1.5
VPS13C-206ENST00000558338 SCGB2A2Q13296 93 aa5.67□□□□□ -1.5
VPS13C-206ENST00000558338 FAM19A2Q8N3H0 131 aa5.67□□□□□ -1.5
VPS13C-206ENST00000558338 EEF1AKMT3Q96AZ1 226 aa5.67□□□□□ -1.5
VPS13C-206ENST00000558338 C17orf77Q96MU5 243 aa5.67□□□□□ -1.5
VPS13C-206ENST00000558338 SLC50A1Q9BRV3 221 aa5.67□□□□□ -1.5
VPS13C-206ENST00000558338 TLN1Q9Y490 2541 aaKnown RBP5.67□□□□□ -1.5
VPS13C-206ENST00000558338 TRBV7-1A0A0A6YYK4 115 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 A0A1W2PPR1 153 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 TMEM189A5PLL7 270 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 LAMA5O15230 3695 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 CTSGP08311 255 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 CTRLP40313 264 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 LMO4P61968 165 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 NUTF2P61970 127 aaKnown RBP5.66□□□□□ -1.5
VPS13C-206ENST00000558338 LY6DQ14210 128 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 ECSCRQ19T08 205 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 ZNF502Q8TBZ5 544 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 TPPP3Q9BW30 176 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 SNHG12Q9BXW3 62 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 BPESC1Q9GZL8 116 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 RNF114Q9Y508 228 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 S4R3C0 116 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 PIEZO2Q9H5I5 2752 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 CENPVL3A0A0U1RRI6 287 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 RBAKDNA6NC62 111 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 M0R3E3 92 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 OVOL3O00110 214 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 ATP6V0E1O15342 81 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 LINC00614P0C842 121 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 RHOGP84095 191 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 C15orf32Q32M92 178 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 ZNF493Q6ZR52 646 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 TMEM70Q9BUB7 260 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 HSPB8Q9UJY1 196 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 MOB4Q9Y3A3 225 aa5.66□□□□□ -1.5
VPS13C-206ENST00000558338 FAM223BA6NKX1 122 aa5.65□□□□□ -1.5
VPS13C-206ENST00000558338 SH2D1AO60880 128 aa5.65□□□□□ -1.5
VPS13C-206ENST00000558338 NDUFS7O75251 213 aa5.65□□□□□ -1.5
VPS13C-206ENST00000558338 LEPROTL1O95214 131 aa5.65□□□□□ -1.5
VPS13C-206ENST00000558338 ARMS2P0C7Q2 107 aa5.65□□□□□ -1.5
VPS13C-206ENST00000558338 GPR183P32249 361 aa5.65□□□□□ -1.5
VPS13C-206ENST00000558338 FAM120AOSQ5T036 256 aa5.65□□□□□ -1.5
VPS13C-206ENST00000558338 FAM223AQ8IWN6 122 aa5.65□□□□□ -1.5
VPS13C-206ENST00000558338 MRPL53Q96EL3 112 aaKnown RBP5.65□□□□□ -1.5
VPS13C-206ENST00000558338 AJUBAQ96IF1 538 aa5.65□□□□□ -1.5
VPS13C-206ENST00000558338 MDFIQ99750 246 aa5.65□□□□□ -1.5
VPS13C-206ENST00000558338 CLEC5AQ9NY25 188 aa5.65□□□□□ -1.5
VPS13C-206ENST00000558338 TRAV9-2A0A087WT02 112 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 IGHV1-24A0A0C4DH33 117 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 C2orf70A6NJV1 201 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 ZNF785A8K8V0 405 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 CRXO43186 299 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-206ENST00000558338 IGHV3-23P01764 117 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 IGLC3P0DOY3 106 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 GNLYP22749 145 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 HNRNPA3P51991 378 aaKnown RBP5.64□□□□□ -1.51
VPS13C-206ENST00000558338 CRIP2P52943 208 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-206ENST00000558338 TDRG1Q3Y452 100 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 C5orf56Q8N8D9 126 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 C8orf49Q96NF6 230 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 PRR25Q96S07 402 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 METTL26Q96S19 204 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 MAP1LC3CQ9BXW4 147 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 TMEM191AQ9H0A3 160 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 HIF1ANQ9NWT6 349 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 DMXL2Q8TDJ6 3036 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 IGKV2-40A0A087WW87 121 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-206ENST00000558338 TMEM8BA6NDV4 472 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 IGKV2D-40P01614 121 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-206ENST00000558338 CRIP1P50238 77 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 PAX8Q06710 450 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 FHL3Q13643 280 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 EBLN2Q6P2I7 272 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 FA2HQ7L5A8 372 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms