RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 RAB1BQ9H0U4 201 aa10.06□□□□□ -0.8
LDLR-207ENST00000558013 C21orf62Q9NYP8 219 aa10.06□□□□□ -0.8
LDLR-207ENST00000558013 NPIPB5A8MRT5 1133 aa10.06□□□□□ -0.8
LDLR-207ENST00000558013 SMKR1H3BMG3 65 aa10.06□□□□□ -0.8
LDLR-207ENST00000558013 PRTN3P24158 256 aa10.06□□□□□ -0.8
LDLR-207ENST00000558013 MRPS16Q9Y3D3 137 aaKnown RBP10.06□□□□□ -0.8
LDLR-207ENST00000558013 CCL25O15444 150 aa10.05□□□□□ -0.8
LDLR-207ENST00000558013 EGR2P11161 476 aaPredicted RBP10.05□□□□□ -0.8
LDLR-207ENST00000558013 MFAP4P55083 255 aa10.05□□□□□ -0.8
LDLR-207ENST00000558013 ZNF562Q6V9R5 426 aa10.05□□□□□ -0.8
LDLR-207ENST00000558013 SMAD5-AS1Q9Y6J3 95 aa10.05□□□□□ -0.8
LDLR-207ENST00000558013 D6R8Y8 96 aa10.05□□□□□ -0.8
LDLR-207ENST00000558013 SH2D1AO60880 128 aa10.05□□□□□ -0.8
LDLR-207ENST00000558013 CTSGP08311 255 aa10.05□□□□□ -0.8
LDLR-207ENST00000558013 TIMD4Q96H15 378 aa10.05□□□□□ -0.8
LDLR-207ENST00000558013 K7EQM0 130 aa10.05□□□□□ -0.8
LDLR-207ENST00000558013 IGHG4P01861 327 aa10.05□□□□□ -0.8
LDLR-207ENST00000558013 LINC01548A6NM66 108 aa10.04□□□□□ -0.8
LDLR-207ENST00000558013 CEACAM3P40198 252 aa10.04□□□□□ -0.8
LDLR-207ENST00000558013 PRSS3P2Q8NHM4 247 aa10.04□□□□□ -0.8
LDLR-207ENST00000558013 AAMDCQ9H7C9 122 aa10.04□□□□□ -0.8
LDLR-207ENST00000558013 AP5S1Q9NUS5 200 aa10.04□□□□□ -0.8
LDLR-207ENST00000558013 MSRB1Q9NZV6 116 aa10.04□□□□□ -0.8
LDLR-207ENST00000558013 IGHV3-49A0A0A0MS15 119 aa10.04□□□□□ -0.8
LDLR-207ENST00000558013 RIGQ13278 110 aa10.04□□□□□ -0.8
LDLR-207ENST00000558013 ZNF575Q86XF7 245 aa10.04□□□□□ -0.8
LDLR-207ENST00000558013 MAP1LC3CQ9BXW4 147 aa10.04□□□□□ -0.8
LDLR-207ENST00000558013 FLNCQ14315 2725 aa10.04□□□□□ -0.8
LDLR-207ENST00000558013 A0A096LNJ9 63 aa10.03□□□□□ -0.8
LDLR-207ENST00000558013 IGHV7-81A0A0B4J1V7 117 aa10.03□□□□□ -0.8
LDLR-207ENST00000558013 GAS8-AS1O95177 125 aa10.03□□□□□ -0.8
LDLR-207ENST00000558013 CT45A10P0DMU9 189 aa10.03□□□□□ -0.8
LDLR-207ENST00000558013 RELQ04864 619 aaPredicted RBP10.03□□□□□ -0.8
LDLR-207ENST00000558013 FBXL19-AS1Q494R0 122 aa10.03□□□□□ -0.8
LDLR-207ENST00000558013 C11orf71Q6IPW1 123 aa10.03□□□□□ -0.8
LDLR-207ENST00000558013 SRSF8Q9BRL6 282 aaKnown RBP10.03□□□□□ -0.8
LDLR-207ENST00000558013 CFAP46Q8IYW2 2715 aa10.03□□□□□ -0.8
LDLR-207ENST00000558013 NUDT3O95989 172 aa10.03□□□□□ -0.8
LDLR-207ENST00000558013 OR5AL1P0C617 328 aa10.03□□□□□ -0.8
LDLR-207ENST00000558013 ERCC8Q13216 396 aa10.03□□□□□ -0.8
LDLR-207ENST00000558013 RNF182Q8N6D2 247 aa10.03□□□□□ -0.8
LDLR-207ENST00000558013 TMEM189A5PLL7 270 aa10.02□□□□□ -0.8
LDLR-207ENST00000558013 PRAC2D3DTV9 90 aa10.02□□□□□ -0.8
LDLR-207ENST00000558013 PPIFP30405 207 aaKnown RBP10.02□□□□□ -0.8
LDLR-207ENST00000558013 ECSCRQ19T08 205 aa10.02□□□□□ -0.8
LDLR-207ENST00000558013 WFDC3Q8IUB2 231 aa10.02□□□□□ -0.8
LDLR-207ENST00000558013 LYPD1Q8N2G4 141 aa10.02□□□□□ -0.8
LDLR-207ENST00000558013 MSRB2Q9Y3D2 182 aa10.02□□□□□ -0.8
LDLR-207ENST00000558013 A0A087X0K7 114 aa10.02□□□□□ -0.81
LDLR-207ENST00000558013 TRBV6-1A0A0K0K1D8 114 aa10.02□□□□□ -0.81
LDLR-207ENST00000558013 TMEM11P17152 192 aa10.02□□□□□ -0.81
LDLR-207ENST00000558013 GPR183P32249 361 aa10.02□□□□□ -0.81
LDLR-207ENST00000558013 TTC9CQ8N5M4 171 aa10.02□□□□□ -0.81
LDLR-207ENST00000558013 OR8A1Q8NGG7 326 aa10.02□□□□□ -0.81
LDLR-207ENST00000558013 ZNF747Q9BV97 191 aa10.02□□□□□ -0.81
LDLR-207ENST00000558013 PIP4P2Q8N4L2 257 aa10.02□□□□□ -0.81
LDLR-207ENST00000558013 PRR25Q96S07 402 aa10.02□□□□□ -0.81
LDLR-207ENST00000558013 SIGLEC8Q9NYZ4 499 aa10.02□□□□□ -0.81
LDLR-207ENST00000558013 G3V318 75 aa10.01□□□□□ -0.81
LDLR-207ENST00000558013 M0R1W7 72 aa10.01□□□□□ -0.81
LDLR-207ENST00000558013 FA2HQ7L5A8 372 aa10.01□□□□□ -0.81
LDLR-207ENST00000558013 TMEM191AQ9H0A3 160 aa10.01□□□□□ -0.81
LDLR-207ENST00000558013 COX11Q9Y6N1 276 aa10.01□□□□□ -0.81
LDLR-207ENST00000558013 CENPEQ02224 2701 aa10.01□□□□□ -0.81
LDLR-207ENST00000558013 ZNF207O43670 478 aaKnown RBP10.01□□□□□ -0.81
LDLR-207ENST00000558013 CSN1S1P47710 185 aa10.01□□□□□ -0.81
LDLR-207ENST00000558013 PTTG1IPP53801 180 aa10.01□□□□□ -0.81
LDLR-207ENST00000558013 FAM162BQ5T6X4 162 aa10.01□□□□□ -0.81
LDLR-207ENST00000558013 Q8N6K4 173 aa10.01□□□□□ -0.81
LDLR-207ENST00000558013 RNF24Q9Y225 148 aa10.01□□□□□ -0.81
LDLR-207ENST00000558013 C15orf32Q32M92 178 aa10□□□□□ -0.81
LDLR-207ENST00000558013 Q6ZQT7 251 aa10□□□□□ -0.81
LDLR-207ENST00000558013 Q8N9W7 124 aa10□□□□□ -0.81
LDLR-207ENST00000558013 ST20Q9HBF5 79 aa10□□□□□ -0.81
LDLR-207ENST00000558013 TRAV30A0A087WSZ9 112 aa10□□□□□ -0.81
LDLR-207ENST00000558013 C20orf202A1L168 122 aa10□□□□□ -0.81
LDLR-207ENST00000558013 CLEC3BP05452 202 aa10□□□□□ -0.81
LDLR-207ENST00000558013 SLC25A34Q6PIV7 304 aa10□□□□□ -0.81
LDLR-207ENST00000558013 SCRT2Q9NQ03 307 aa10□□□□□ -0.81
LDLR-207ENST00000558013 TWIST1Q15672 202 aa10□□□□□ -0.81
LDLR-207ENST00000558013 MRPL51Q4U2R6 128 aaKnown RBP10□□□□□ -0.81
LDLR-207ENST00000558013 PRELID3AQ96N28 172 aa10□□□□□ -0.81
LDLR-207ENST00000558013 PDE6HQ13956 83 aa9.99□□□□□ -0.81
LDLR-207ENST00000558013 LINC01545Q5VT33 79 aa9.99□□□□□ -0.81
LDLR-207ENST00000558013 FAM104BQ5XKR9 115 aa9.99□□□□□ -0.81
LDLR-207ENST00000558013 AJUBAQ96IF1 538 aa9.99□□□□□ -0.81
LDLR-207ENST00000558013 LINC00527Q9UJ94 153 aa9.99□□□□□ -0.81
LDLR-207ENST00000558013 HSPB8Q9UJY1 196 aa9.99□□□□□ -0.81
LDLR-207ENST00000558013 NPYP01303 97 aa9.99□□□□□ -0.81
LDLR-207ENST00000558013 ORM1P02763 201 aa9.99□□□□□ -0.81
LDLR-207ENST00000558013 PET117Q6UWS5 81 aa9.99□□□□□ -0.81
LDLR-207ENST00000558013 RABAC1Q9UI14 185 aa9.99□□□□□ -0.81
LDLR-207ENST00000558013 SELENOKQ9Y6D0 94 aa9.99□□□□□ -0.81
LDLR-207ENST00000558013 IGHV3OR16-10A0A075B7F0 116 aa9.98□□□□□ -0.81
LDLR-207ENST00000558013 HSBP1L1C9JCN9 74 aa9.98□□□□□ -0.81
LDLR-207ENST00000558013 ATP6V0E1O15342 81 aa9.98□□□□□ -0.81
LDLR-207ENST00000558013 RPL7P18124 248 aaKnown RBP9.98□□□□□ -0.81
LDLR-207ENST00000558013 BVES-AS1Q5T3Y7 98 aa9.98□□□□□ -0.81
LDLR-207ENST00000558013 ZNF493Q6ZR52 646 aa9.98□□□□□ -0.81
LDLR-207ENST00000558013 ORAOV1Q8WV07 137 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms