RNA–Protein interactions for RNA: ENST00000557657.5

TMEM260-216, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-216ENST00000557657 EFNA4P52798 201 aa16.49■□□□□ 0.23
TMEM260-216ENST00000557657 A0A1B0GUT8 65 aa16.48■□□□□ 0.23
TMEM260-216ENST00000557657 IGHG4P01861 327 aa16.48■□□□□ 0.23
TMEM260-216ENST00000557657 FAM106CPP0CH98 169 aa16.48■□□□□ 0.23
TMEM260-216ENST00000557657 LYPD1Q8N2G4 141 aa16.48■□□□□ 0.23
TMEM260-216ENST00000557657 CLEC3BP05452 202 aa16.48■□□□□ 0.23
TMEM260-216ENST00000557657 TFPI2P48307 235 aa16.48■□□□□ 0.23
TMEM260-216ENST00000557657 THYN1Q9P016 225 aa16.48■□□□□ 0.23
TMEM260-216ENST00000557657 IGLC3P0DOY3 106 aa16.47■□□□□ 0.23
TMEM260-216ENST00000557657 RNF24Q9Y225 148 aa16.47■□□□□ 0.23
TMEM260-216ENST00000557657 SOX21Q9Y651 276 aaPredicted RBP16.47■□□□□ 0.23
TMEM260-216ENST00000557657 TMEM213A2RRL7 107 aa16.47■□□□□ 0.23
TMEM260-216ENST00000557657 H0Y8G0 127 aa16.47■□□□□ 0.23
TMEM260-216ENST00000557657 BTF3P20290 206 aaKnown RBP16.47■□□□□ 0.23
TMEM260-216ENST00000557657 ZNF80P51504 273 aaPredicted RBP16.47■□□□□ 0.23
TMEM260-216ENST00000557657 UBE2E1P51965 193 aa16.47■□□□□ 0.23
TMEM260-216ENST00000557657 RHOGP84095 191 aa16.47■□□□□ 0.23
TMEM260-216ENST00000557657 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.46■□□□□ 0.23
TMEM260-216ENST00000557657 TRBV6-1A0A0K0K1D8 114 aa16.46■□□□□ 0.23
TMEM260-216ENST00000557657 FAM231BA6NCW3 169 aa16.46■□□□□ 0.23
TMEM260-216ENST00000557657 ZNF207O43670 478 aaKnown RBP16.46■□□□□ 0.23
TMEM260-216ENST00000557657 ZNF48Q96MX3 618 aaPredicted RBP16.46■□□□□ 0.23
TMEM260-216ENST00000557657 SH2D1AO60880 128 aa16.46■□□□□ 0.23
TMEM260-216ENST00000557657 LINC00614P0C842 121 aa16.46■□□□□ 0.23
TMEM260-216ENST00000557657 RNF182Q8N6D2 247 aa16.46■□□□□ 0.23
TMEM260-216ENST00000557657 RABAC1Q9UI14 185 aa16.46■□□□□ 0.23
TMEM260-216ENST00000557657 OOSP1A8MZH6 123 aa16.45■□□□□ 0.22
TMEM260-216ENST00000557657 RELQ04864 619 aaPredicted RBP16.45■□□□□ 0.22
TMEM260-216ENST00000557657 PRAC2D3DTV9 90 aa16.45■□□□□ 0.22
TMEM260-216ENST00000557657 LYZL1Q6UWQ5 148 aa16.45■□□□□ 0.22
TMEM260-216ENST00000557657 CLEC19AQ6UXS0 136 aa16.45■□□□□ 0.22
TMEM260-216ENST00000557657 Q6ZN92 141 aa16.45■□□□□ 0.22
TMEM260-216ENST00000557657 ERCC8Q13216 396 aa16.44■□□□□ 0.22
TMEM260-216ENST00000557657 PDE6HQ13956 83 aa16.44■□□□□ 0.22
TMEM260-216ENST00000557657 TXN2Q99757 166 aa16.44■□□□□ 0.22
TMEM260-216ENST00000557657 CT45A10P0DMU9 189 aa16.44■□□□□ 0.22
TMEM260-216ENST00000557657 RPL7P18124 248 aaKnown RBP16.44■□□□□ 0.22
TMEM260-216ENST00000557657 CSN1S1P47710 185 aa16.44■□□□□ 0.22
TMEM260-216ENST00000557657 NDFIP1Q9BT67 221 aa16.44■□□□□ 0.22
TMEM260-216ENST00000557657 USP9XQ93008 2570 aaPredicted RBP16.44■□□□□ 0.22
TMEM260-216ENST00000557657 SERTM2A0A1B0GWG4 89 aa16.43■□□□□ 0.22
TMEM260-216ENST00000557657 IGLL1P15814 213 aa16.43■□□□□ 0.22
TMEM260-216ENST00000557657 FAM106AQ4KMX7 169 aa16.43■□□□□ 0.22
TMEM260-216ENST00000557657 BRD3OSQ6XYD6 125 aa16.43■□□□□ 0.22
TMEM260-216ENST00000557657 ZNF502Q8TBZ5 544 aa16.43■□□□□ 0.22
TMEM260-216ENST00000557657 PMCHL2Q9BQD1 86 aa16.43■□□□□ 0.22
TMEM260-216ENST00000557657 IGHV4-39P01824 125 aa16.43■□□□□ 0.22
TMEM260-216ENST00000557657 CCDC140Q96MF4 163 aa16.43■□□□□ 0.22
TMEM260-216ENST00000557657 CENPVL3A0A0U1RRI6 287 aa16.42■□□□□ 0.22
TMEM260-216ENST00000557657 PRR25Q96S07 402 aa16.42■□□□□ 0.22
TMEM260-216ENST00000557657 IGSF10Q6WRI0 2623 aa16.42■□□□□ 0.22
TMEM260-216ENST00000557657 LEPROTL1O95214 131 aa16.42■□□□□ 0.22
TMEM260-216ENST00000557657 FAM110DQ8TAY7 271 aaPredicted RBP16.42■□□□□ 0.22
TMEM260-216ENST00000557657 TMEM70Q9BUB7 260 aa16.42■□□□□ 0.22
TMEM260-216ENST00000557657 TMEM189A5PLL7 270 aa16.41■□□□□ 0.22
TMEM260-216ENST00000557657 NPFFO15130 113 aa16.41■□□□□ 0.22
TMEM260-216ENST00000557657 RIGQ13278 110 aa16.41■□□□□ 0.22
TMEM260-216ENST00000557657 PRORYQ9H606 182 aa16.41■□□□□ 0.22
TMEM260-216ENST00000557657 ZNF25P17030 456 aaPredicted RBP16.41■□□□□ 0.22
TMEM260-216ENST00000557657 FXYD7P58549 80 aa16.41■□□□□ 0.22
TMEM260-216ENST00000557657 PSG9Q00887 426 aa16.41■□□□□ 0.22
TMEM260-216ENST00000557657 AMN1Q8IY45 258 aa16.41■□□□□ 0.22
TMEM260-216ENST00000557657 ZFAND3Q9H8U3 227 aa16.41■□□□□ 0.22
TMEM260-216ENST00000557657 UQCR10Q9UDW1 63 aa16.41■□□□□ 0.22
TMEM260-216ENST00000557657 LOC389332A0A1B0GUA5 103 aa16.4■□□□□ 0.22
TMEM260-216ENST00000557657 hDV102S1A0JD36 115 aa16.4■□□□□ 0.22
TMEM260-216ENST00000557657 ZNF575Q86XF7 245 aa16.4■□□□□ 0.22
TMEM260-216ENST00000557657 LOXL1Q08397 574 aaPredicted RBP16.4■□□□□ 0.22
TMEM260-216ENST00000557657 CENPEQ02224 2701 aa16.4■□□□□ 0.22
TMEM260-216ENST00000557657 CLPSL1A2RUU4 121 aa16.39■□□□□ 0.22
TMEM260-216ENST00000557657 RPLP1P05386 114 aaKnown RBP16.39■□□□□ 0.22
TMEM260-216ENST00000557657 FAM162BQ5T6X4 162 aa16.39■□□□□ 0.22
TMEM260-216ENST00000557657 CHCHD1Q96BP2 118 aaKnown RBP16.39■□□□□ 0.22
TMEM260-216ENST00000557657 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.39■□□□□ 0.215e-6■■■■□ 22.8
TMEM260-216ENST00000557657 TRAV9-2A0A087WT02 112 aa16.39■□□□□ 0.21
TMEM260-216ENST00000557657 OR4C46A6NHA9 309 aa16.39■□□□□ 0.21
TMEM260-216ENST00000557657 SYS1-DBNDD2H3BUS1 97 aa16.39■□□□□ 0.21
TMEM260-216ENST00000557657 HNRNPA3P51991 378 aaKnown RBP16.39■□□□□ 0.21
TMEM260-216ENST00000557657 SMKR1H3BMG3 65 aa16.38■□□□□ 0.21
TMEM260-216ENST00000557657 D6R8Y8 96 aa16.38■□□□□ 0.21
TMEM260-216ENST00000557657 STPG4Q8N801 248 aa16.38■□□□□ 0.21
TMEM260-216ENST00000557657 BUB3O43684 328 aa16.37■□□□□ 0.21
TMEM260-216ENST00000557657 PPIFP30405 207 aaKnown RBP16.37■□□□□ 0.21
TMEM260-216ENST00000557657 S100A7AQ86SG5 101 aa16.37■□□□□ 0.21
TMEM260-216ENST00000557657 MSRB1Q9NZV6 116 aa16.37■□□□□ 0.21
TMEM260-216ENST00000557657 IFI27P40305 119 aaPredicted RBP16.37■□□□□ 0.21
TMEM260-216ENST00000557657 MYO18BQ8IUG5 2567 aa16.37■□□□□ 0.21
TMEM260-216ENST00000557657 IGHV4-61A0A0C4DH41 118 aa16.36■□□□□ 0.21
TMEM260-216ENST00000557657 Q6ZVH6 145 aa16.36■□□□□ 0.21
TMEM260-216ENST00000557657 C5orf56Q8N8D9 126 aa16.36■□□□□ 0.21
TMEM260-216ENST00000557657 ZFYVE26Q68DK2 2539 aa16.36■□□□□ 0.21
TMEM260-216ENST00000557657 M0QZK8 103 aa16.36■□□□□ 0.21
TMEM260-216ENST00000557657 TSPOP30536 169 aa16.36■□□□□ 0.21
TMEM260-216ENST00000557657 Q6ZQT7 251 aa16.36■□□□□ 0.21
TMEM260-216ENST00000557657 HINT1P49773 126 aaPredicted RBP16.35■□□□□ 0.21
TMEM260-216ENST00000557657 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.35■□□□□ 0.21
TMEM260-216ENST00000557657 SELENOKQ9Y6D0 94 aa16.35■□□□□ 0.21
TMEM260-216ENST00000557657 CSPG4Q6UVK1 2322 aa16.35■□□□□ 0.21
TMEM260-216ENST00000557657 TRAV40A0A0B4J280 105 aa16.35■□□□□ 0.21
TMEM260-216ENST00000557657 ZANQ9Y493 2812 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms