RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 MYO18AQ92614 2054 aaKnown RBP0.34□□□□□ -2.35
SCFD1-218ENST00000556256 A0A0D9SG42 100 aa0.34□□□□□ -2.36
SCFD1-218ENST00000556256 BCL9O00512 1426 aa0.34□□□□□ -2.36
SCFD1-218ENST00000556256 LYRM1O43325 122 aa0.34□□□□□ -2.36
SCFD1-218ENST00000556256 CST7O76096 145 aa0.34□□□□□ -2.36
SCFD1-218ENST00000556256 PPP1R2P41236 205 aa0.34□□□□□ -2.36
SCFD1-218ENST00000556256 RPL35P42766 123 aaKnown RBP0.34□□□□□ -2.36
SCFD1-218ENST00000556256 TCTAP57738 103 aa0.34□□□□□ -2.36
SCFD1-218ENST00000556256 SPATA8Q6RVD6 105 aa0.34□□□□□ -2.36
SCFD1-218ENST00000556256 CCL4L1Q8NHW4 92 aa0.34□□□□□ -2.36
SCFD1-218ENST00000556256 TCEAL2Q9H3H9 227 aaPredicted RBP0.34□□□□□ -2.36
SCFD1-218ENST00000556256 IL20Q9NYY1 176 aa0.34□□□□□ -2.36
SCFD1-218ENST00000556256 MYO5AQ9Y4I1 1855 aaKnown RBP0.34□□□□□ -2.36
SCFD1-218ENST00000556256 CITO14578 2027 aa0.33□□□□□ -2.36
SCFD1-218ENST00000556256 ZNF469Q96JG9 3925 aaPredicted RBP0.33□□□□□ -2.36
SCFD1-218ENST00000556256 A0A0J9YY99 117 aa0.33□□□□□ -2.36
SCFD1-218ENST00000556256 CD14P08571 375 aa0.33□□□□□ -2.36
SCFD1-218ENST00000556256 CIRBPQ14011 172 aaKnown RBP0.33□□□□□ -2.36
SCFD1-218ENST00000556256 ATOH7Q8N100 152 aa0.33□□□□□ -2.36
SCFD1-218ENST00000556256 DIRC1Q969H9 104 aa0.33□□□□□ -2.36
SCFD1-218ENST00000556256 LRTM1Q9HBL6 345 aa0.33□□□□□ -2.36
SCFD1-218ENST00000556256 BIN3Q9NQY0 253 aa0.33□□□□□ -2.36
SCFD1-218ENST00000556256 LAMTOR3Q9UHA4 124 aa0.33□□□□□ -2.36
SCFD1-218ENST00000556256 NUBP2Q9Y5Y2 271 aa0.33□□□□□ -2.36
SCFD1-218ENST00000556256 YTHDC2Q9H6S0 1430 aaKnown RBP0.32□□□□□ -2.36
SCFD1-218ENST00000556256 H3BQV1 296 aa0.32□□□□□ -2.36
SCFD1-218ENST00000556256 H7BYZ3 331 aa0.32□□□□□ -2.36
SCFD1-218ENST00000556256 FXYD4P59646 89 aa0.32□□□□□ -2.36
SCFD1-218ENST00000556256 SPINK9Q5DT21 86 aa0.32□□□□□ -2.36
SCFD1-218ENST00000556256 TMEM78Q5T7P6 136 aa0.32□□□□□ -2.36
SCFD1-218ENST00000556256 C3orf33Q6P1S2 294 aa0.32□□□□□ -2.36
SCFD1-218ENST00000556256 ZCCHC23Q6ZST2 131 aa0.32□□□□□ -2.36
SCFD1-218ENST00000556256 STX19Q8N4C7 294 aa0.32□□□□□ -2.36
SCFD1-218ENST00000556256 NEK7Q8TDX7 302 aa0.32□□□□□ -2.36
SCFD1-218ENST00000556256 BORCS8Q96FH0 119 aa0.32□□□□□ -2.36
SCFD1-218ENST00000556256 CST11Q9H112 138 aa0.32□□□□□ -2.36
SCFD1-218ENST00000556256 GID8Q9NWU2 228 aa0.32□□□□□ -2.36
SCFD1-218ENST00000556256 MYLKQ15746 1914 aa0.32□□□□□ -2.36
SCFD1-218ENST00000556256 ROCK1Q13464 1354 aa0.32□□□□□ -2.36
SCFD1-218ENST00000556256 ASCC3Q8N3C0 2202 aaKnown RBP0.32□□□□□ -2.36
SCFD1-218ENST00000556256 TECPR2O15040 1411 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 KIAA1107Q9UPP5 1409 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 TRAPPC8Q9Y2L5 1435 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 TRAV23DV6A0A075B6W5 121 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 TRDV1A0A1B0GX56 115 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 A6NN06 94 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 E5RI56 91 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 PPP5D1E7EU14 171 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 KPNA4O00629 521 aaPredicted RBP0.31□□□□□ -2.36
SCFD1-218ENST00000556256 PRH1P02810 166 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 PDE6GP18545 87 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 G0S2P27469 103 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 SERPINB1P30740 379 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 GNG10P50151 68 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 MRPS36P82909 103 aaKnown RBP0.31□□□□□ -2.36
SCFD1-218ENST00000556256 DIAPH2-AS1Q14236 149 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 OCIAD2Q56VL3 154 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 PPP1R2P3Q6NXS1 205 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 LINC00299Q6ZSB3 139 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 FAM24BQ8N5W8 94 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 MCEEQ96PE7 176 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 LIMD2Q9BT23 127 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 NAT8BQ9UHF3 227 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 NUP210LQ5VU65 1888 aa0.31□□□□□ -2.36
SCFD1-218ENST00000556256 PTPRFP10586 1907 aa0.3□□□□□ -2.36
SCFD1-218ENST00000556256 A0A096LPI6 279 aa0.3□□□□□ -2.36
SCFD1-218ENST00000556256 PHGR1C9JFL3 82 aa0.3□□□□□ -2.36
SCFD1-218ENST00000556256 DCUN1D2Q6PH85 259 aa0.3□□□□□ -2.36
SCFD1-218ENST00000556256 MED11Q9P086 117 aa0.3□□□□□ -2.36
SCFD1-218ENST00000556256 SYNMO15061 1565 aa0.3□□□□□ -2.36
SCFD1-218ENST00000556256 PIK3C2AO00443 1686 aa0.3□□□□□ -2.36
SCFD1-218ENST00000556256 ADGBQ8N7X0 1667 aa0.3□□□□□ -2.36
SCFD1-218ENST00000556256 N4BP2Q86UW6 1770 aaPredicted RBP0.29□□□□□ -2.36
SCFD1-218ENST00000556256 MUC4Q99102 2169 aa0.29□□□□□ -2.36
SCFD1-218ENST00000556256 TRBV30A0A0K0K1B3 111 aa0.29□□□□□ -2.36
SCFD1-218ENST00000556256 MAP1LC3B2A6NCE7 125 aa0.29□□□□□ -2.36
SCFD1-218ENST00000556256 ZNF727A8MUV8 499 aa0.29□□□□□ -2.36
SCFD1-218ENST00000556256 IGHV3-30P01768 117 aa0.29□□□□□ -2.36
SCFD1-218ENST00000556256 MT-ND6P03923 174 aa0.29□□□□□ -2.36
SCFD1-218ENST00000556256 IGHV3-30-5P0DP03 117 aa0.29□□□□□ -2.36
SCFD1-218ENST00000556256 FABP4P15090 132 aa0.29□□□□□ -2.36
SCFD1-218ENST00000556256 VMA21Q3ZAQ7 101 aa0.29□□□□□ -2.36
SCFD1-218ENST00000556256 TRIQKQ629K1 86 aa0.29□□□□□ -2.36
SCFD1-218ENST00000556256 ISOC1Q96CN7 298 aa0.29□□□□□ -2.36
SCFD1-218ENST00000556256 OR4C12Q96R67 309 aa0.29□□□□□ -2.36
SCFD1-218ENST00000556256 EFCAB11Q9BUY7 163 aa0.29□□□□□ -2.36
SCFD1-218ENST00000556256 TPRKBQ9Y3C4 175 aa0.29□□□□□ -2.36
SCFD1-218ENST00000556256 CHD3Q12873 2000 aaKnown RBP0.28□□□□□ -2.36
SCFD1-218ENST00000556256 A0A1W2PRE2 83 aa0.28□□□□□ -2.36
SCFD1-218ENST00000556256 GABARAPH6UMI1 98 aa0.28□□□□□ -2.36
SCFD1-218ENST00000556256 KRTAP2-3P0C7H8 128 aa0.28□□□□□ -2.36
SCFD1-218ENST00000556256 Q6ZQY7 126 aa0.28□□□□□ -2.36
SCFD1-218ENST00000556256 DYDC1Q8WWB3 177 aa0.28□□□□□ -2.36
SCFD1-218ENST00000556256 RMND5BQ96G75 393 aaPredicted RBP0.28□□□□□ -2.36
SCFD1-218ENST00000556256 SMR3AQ99954 134 aa0.28□□□□□ -2.36
SCFD1-218ENST00000556256 KRTAP2-4Q9BYR9 128 aa0.28□□□□□ -2.36
SCFD1-218ENST00000556256 KRTAP2-1Q9BYU5 128 aa0.28□□□□□ -2.36
SCFD1-218ENST00000556256 NIT2Q9NQR4 276 aa0.28□□□□□ -2.36
SCFD1-218ENST00000556256 SMPXQ9UHP9 88 aa0.28□□□□□ -2.36
SCFD1-218ENST00000556256 MYH2Q9UKX2 1941 aa0.27□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms