RNA–Protein interactions for RNA: ENST00000555906.5

PRKCH-219, Transcript of protein kinase C eta, human

TSL 3

Gene PRKCH, Length 459 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-219	ENST00000555906	LSM5	Q9Y4Y9	91 aa	Known RBP	13.79	□□□□□ -0.2
PRKCH-219	ENST00000555906	LRP1B	Q9NZR2	4599 aa		13.79	□□□□□ -0.2
PRKCH-219	ENST00000555906	ABCA13	Q86UQ4	5058 aa		13.78	□□□□□ -0.2
PRKCH-219	ENST00000555906		H3BTX0	84 aa		13.78	□□□□□ -0.2
PRKCH-219	ENST00000555906	PLA2G10	O15496	165 aa		13.78	□□□□□ -0.2
PRKCH-219	ENST00000555906	BCAP31	P51572	246 aa		13.78	□□□□□ -0.2
PRKCH-219	ENST00000555906	CAV2	P51636	162 aa		13.78	□□□□□ -0.2
PRKCH-219	ENST00000555906	NRARP	Q7Z6K4	114 aa		13.78	□□□□□ -0.2
PRKCH-219	ENST00000555906	OR1L4	Q8NGR5	311 aa		13.78	□□□□□ -0.2
PRKCH-219	ENST00000555906	PFDN5	Q99471	154 aa		13.78	□□□□□ -0.2
PRKCH-219	ENST00000555906	DNAJC4	Q9NNZ3	241 aa		13.78	□□□□□ -0.2
PRKCH-219	ENST00000555906	UQCC1	Q9NVA1	299 aa		13.78	□□□□□ -0.2
PRKCH-219	ENST00000555906	WDR83OS	Q9Y284	106 aa		13.78	□□□□□ -0.2
PRKCH-219	ENST00000555906	LINC00588	Q9Y4M8	146 aa		13.78	□□□□□ -0.2
PRKCH-219	ENST00000555906	FAM25E	A8MYX2	175 aa		13.77	□□□□□ -0.21
PRKCH-219	ENST00000555906		H3BQ15	152 aa		13.77	□□□□□ -0.21
PRKCH-219	ENST00000555906	TCRB	P04435	133 aa		13.77	□□□□□ -0.21
PRKCH-219	ENST00000555906	VWC2	Q2TAL6	325 aa		13.77	□□□□□ -0.21
PRKCH-219	ENST00000555906	CCDC28A	Q8IWP9	274 aa		13.77	□□□□□ -0.21
PRKCH-219	ENST00000555906	C6orf223	Q8N319	242 aa		13.77	□□□□□ -0.21
PRKCH-219	ENST00000555906	ZNF431	Q8TF32	576 aa	Predicted RBP	13.77	□□□□□ -0.21
PRKCH-219	ENST00000555906	NPIPB6	E9PJ23	425 aa		13.76	□□□□□ -0.21
PRKCH-219	ENST00000555906	ZNF253	O75346	499 aa		13.76	□□□□□ -0.21
PRKCH-219	ENST00000555906	CST7	O76096	145 aa		13.76	□□□□□ -0.21
PRKCH-219	ENST00000555906	LEP	P41159	167 aa		13.76	□□□□□ -0.21
PRKCH-219	ENST00000555906	TNP2	Q05952	138 aa		13.76	□□□□□ -0.21
PRKCH-219	ENST00000555906	CLINT1	Q14677	625 aa		13.76	□□□□□ -0.21
PRKCH-219	ENST00000555906	MIC13	Q5XKP0	118 aa		13.76	□□□□□ -0.21
PRKCH-219	ENST00000555906	NUDT15	Q9NV35	164 aa		13.76	□□□□□ -0.21
PRKCH-219	ENST00000555906	TRAV6	A0A075B6T7	132 aa		13.75	□□□□□ -0.21
PRKCH-219	ENST00000555906	UBE2L5P	A0A1B0GUS4	154 aa		13.75	□□□□□ -0.21
PRKCH-219	ENST00000555906	C5orf51	A6NDU8	294 aa		13.75	□□□□□ -0.21
PRKCH-219	ENST00000555906	PVALB	P20472	110 aa	Predicted RBP	13.75	□□□□□ -0.21
PRKCH-219	ENST00000555906	M6PR	P20645	277 aa		13.75	□□□□□ -0.21
PRKCH-219	ENST00000555906	MRPL53	Q96EL3	112 aa	Known RBP	13.75	□□□□□ -0.21
PRKCH-219	ENST00000555906	ZNF503	Q96F45	646 aa		13.75	□□□□□ -0.21
PRKCH-219	ENST00000555906	C2orf50	Q96LR7	162 aa		13.75	□□□□□ -0.21
PRKCH-219	ENST00000555906	SEC22C	Q9BRL7	303 aa		13.75	□□□□□ -0.21
PRKCH-219	ENST00000555906	LYRM2	Q9NU23	88 aa	Predicted RBP	13.75	□□□□□ -0.21
PRKCH-219	ENST00000555906	FAM24A	A6NFZ4	105 aa		13.74	□□□□□ -0.21
PRKCH-219	ENST00000555906	SNURFL	B1AK76	121 aa		13.74	□□□□□ -0.21
PRKCH-219	ENST00000555906	RLN2	P04090	185 aa		13.74	□□□□□ -0.21
PRKCH-219	ENST00000555906	CT45A10	P0DMU9	189 aa		13.74	□□□□□ -0.21
PRKCH-219	ENST00000555906	RPL29	P47914	159 aa	Known RBP	13.74	□□□□□ -0.21
PRKCH-219	ENST00000555906	SULT1A1	P50225	295 aa		13.74	□□□□□ -0.21
PRKCH-219	ENST00000555906	SSX7	Q7RTT5	188 aa		13.74	□□□□□ -0.21
PRKCH-219	ENST00000555906	GNPNAT1	Q96EK6	184 aa	Predicted RBP	13.74	□□□□□ -0.21
PRKCH-219	ENST00000555906	PYGO2	Q9BRQ0	406 aa		13.74	□□□□□ -0.21
PRKCH-219	ENST00000555906	SLC39A9	Q9NUM3	307 aa		13.74	□□□□□ -0.21
PRKCH-219	ENST00000555906	ZNF586	Q9NXT0	402 aa		13.74	□□□□□ -0.21
PRKCH-219	ENST00000555906	TRAV26-1	A0A087WT03	109 aa		13.73	□□□□□ -0.21
PRKCH-219	ENST00000555906	TRAV5	A0A0B4J249	113 aa		13.73	□□□□□ -0.21
PRKCH-219	ENST00000555906	BAX	Q07812	192 aa		13.73	□□□□□ -0.21
PRKCH-219	ENST00000555906	STX12	Q86Y82	276 aa		13.73	□□□□□ -0.21
PRKCH-219	ENST00000555906	C12orf45	Q8N5I9	185 aa	Predicted RBP	13.73	□□□□□ -0.21
PRKCH-219	ENST00000555906	RXFP4	Q8TDU9	374 aa		13.73	□□□□□ -0.21
PRKCH-219	ENST00000555906	CHAC2	Q8WUX2	184 aa		13.73	□□□□□ -0.21
PRKCH-219	ENST00000555906	IGSF23	A1L1A6	192 aa		13.72	□□□□□ -0.21
PRKCH-219	ENST00000555906	GAGE12B	A1L429	117 aa		13.72	□□□□□ -0.21
PRKCH-219	ENST00000555906		J3KRW8	73 aa		13.72	□□□□□ -0.21
PRKCH-219	ENST00000555906	GAGE7	O76087	117 aa		13.72	□□□□□ -0.21
PRKCH-219	ENST00000555906	GAGE12F	P0CL80	117 aa		13.72	□□□□□ -0.21
PRKCH-219	ENST00000555906	GAGE12G	P0CL81	117 aa		13.72	□□□□□ -0.21
PRKCH-219	ENST00000555906	GAGE12I	P0CL82	117 aa		13.72	□□□□□ -0.21
PRKCH-219	ENST00000555906	S100A11	P31949	105 aa		13.72	□□□□□ -0.21
PRKCH-219	ENST00000555906	S100A10	P60903	97 aa		13.72	□□□□□ -0.21
PRKCH-219	ENST00000555906	HBG1	P69891	147 aa		13.72	□□□□□ -0.21
PRKCH-219	ENST00000555906	HBG2	P69892	147 aa		13.72	□□□□□ -0.21
PRKCH-219	ENST00000555906	OR5I1	Q13606	314 aa		13.72	□□□□□ -0.21
PRKCH-219	ENST00000555906	TMEM14C	Q9P0S9	112 aa		13.72	□□□□□ -0.21
PRKCH-219	ENST00000555906	TRBV19	A0A075B6N1	114 aa		13.71	□□□□□ -0.21
PRKCH-219	ENST00000555906	TRAV12-3	A0A0B4J271	114 aa		13.71	□□□□□ -0.21
PRKCH-219	ENST00000555906	C16orf90	A8MZG2	172 aa		13.71	□□□□□ -0.21
PRKCH-219	ENST00000555906		H3BNG1	76 aa		13.71	□□□□□ -0.21
PRKCH-219	ENST00000555906	HOXA5	P20719	270 aa		13.71	□□□□□ -0.21
PRKCH-219	ENST00000555906	DAZ2	Q13117	558 aa	Known RBP	13.71	□□□□□ -0.21
PRKCH-219	ENST00000555906	PDE6H	Q13956	83 aa		13.71	□□□□□ -0.21
PRKCH-219	ENST00000555906	TTC32	Q5I0X7	151 aa		13.71	□□□□□ -0.21
PRKCH-219	ENST00000555906	TMEM252	Q8N6L7	170 aa		13.71	□□□□□ -0.21
PRKCH-219	ENST00000555906	UPK3B	Q9BT76	320 aa		13.71	□□□□□ -0.21
PRKCH-219	ENST00000555906	CCDC32	Q9BV29	185 aa		13.71	□□□□□ -0.21
PRKCH-219	ENST00000555906	SLC25A5	P05141	298 aa	Known RBP	13.7	□□□□□ -0.22
PRKCH-219	ENST00000555906	FGF7	P21781	194 aa		13.7	□□□□□ -0.22
PRKCH-219	ENST00000555906	IL15RA	Q13261	267 aa		13.7	□□□□□ -0.22
PRKCH-219	ENST00000555906	RAB32	Q13637	225 aa		13.7	□□□□□ -0.22
PRKCH-219	ENST00000555906	ZNF680	Q8NEM1	530 aa		13.7	□□□□□ -0.22
PRKCH-219	ENST00000555906	PRELID1	Q9Y255	219 aa		13.7	□□□□□ -0.22
PRKCH-219	ENST00000555906	APOB	P04114	4563 aa	Known RBP	13.7	□□□□□ -0.22
PRKCH-219	ENST00000555906		A0A0J9YY99	117 aa		13.69	□□□□□ -0.22
PRKCH-219	ENST00000555906	C7orf71	A4D174	169 aa		13.69	□□□□□ -0.22
PRKCH-219	ENST00000555906		M0R3E3	92 aa		13.69	□□□□□ -0.22
PRKCH-219	ENST00000555906	MPDU1	O75352	247 aa		13.69	□□□□□ -0.22
PRKCH-219	ENST00000555906	H2AFB2	P0C5Z0	115 aa		13.69	□□□□□ -0.22
PRKCH-219	ENST00000555906	ATP6V1F	Q16864	119 aa		13.69	□□□□□ -0.22
PRKCH-219	ENST00000555906		Q9H3A6	140 aa		13.69	□□□□□ -0.22
PRKCH-219	ENST00000555906	TMPRSS5	Q9H3S3	457 aa		13.69	□□□□□ -0.22
PRKCH-219	ENST00000555906		Q9H8V8	135 aa		13.69	□□□□□ -0.22
PRKCH-219	ENST00000555906	KLLN	B2CW77	178 aa		13.68	□□□□□ -0.22
PRKCH-219	ENST00000555906	NDUFB4	O95168	129 aa		13.68	□□□□□ -0.22
PRKCH-219	ENST00000555906	HIST1H1E	P10412	219 aa	Known RBP	13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms