RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 MS4A6AQ9H2W1 248 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 UBE2CO00762 179 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 MMP23AO75900 390 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 LMO1P25800 156 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 PARD6GQ9BYG4 376 aaPredicted RBP6.58□□□□□ -1.36
SYNE2-220ENST00000555612 NHP2Q9NX24 153 aaKnown RBP6.58□□□□□ -1.36
SYNE2-220ENST00000555612 TSC2P49815 1807 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 ADORA2A-AS1P86434 159 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 TTC32Q5I0X7 151 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 Q6ZS49 121 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 IGFBPL1Q8WX77 278 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 SMKR1H3BMG3 65 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 C10orf126Q8N4M7 172 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 ANAPC10Q9UM13 185 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 YPEL3P61236 119 aaPredicted RBP6.57□□□□□ -1.36
SYNE2-220ENST00000555612 TMEM190Q8WZ59 177 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 LIME1Q9H400 295 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 BDP1A6H8Y1 2624 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 GGTLC3B5MD39 225 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 CCL24O00175 119 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 IGHV4-38-2P0DP08 117 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 SEC11AP67812 179 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 C8orf86Q6ZUL3 223 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 Q86TA4 180 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 GNB1LQ9BYB4 327 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 NDUFA4L2Q9NRX3 87 aa6.57□□□□□ -1.36
SYNE2-220ENST00000555612 MRPL27Q9P0M9 148 aaKnown RBP6.57□□□□□ -1.36
SYNE2-220ENST00000555612 LINC01549A6NIU2 74 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 TMEM170AQ8WVE7 144 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 CITED2Q99967 270 aaPredicted RBP6.56□□□□□ -1.36
SYNE2-220ENST00000555612 TMEM242Q9NWH2 141 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 COLCA2A8K830 154 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 IGHV2-70P01814 119 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 IGF2-ASQ6U949 168 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 SPOCK3Q9BQ16 436 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 IGHV1OR15-1A0A075B7D0 117 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 TRAV9-2A0A087WT02 112 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 ZNF524Q96C55 264 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 IGF2BP2-AS1Q96M15 143 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 FAM208BQ5VWN6 2430 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 TRBV25-1A0A075B6N4 114 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 M0R2P5 195 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 PLXNA3P51805 1871 aa6.56□□□□□ -1.36
SYNE2-220ENST00000555612 TRAV1-1A0A0B4J248 108 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 IGHV3-38A0A0C4DH36 116 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 LINC00587B1AMM8 73 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 RHODO00212 210 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 PDE6HQ13956 83 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 DLX4Q92988 240 aaPredicted RBP6.55□□□□□ -1.36
SYNE2-220ENST00000555612 CHCHD1Q96BP2 118 aaKnown RBP6.55□□□□□ -1.36
SYNE2-220ENST00000555612 ABCA1O95477 2261 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 IGLV2-23P01705 113 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 IGFL2Q6UWQ7 119 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 TRPT1Q86TN4 253 aaKnown RBP6.55□□□□□ -1.36
SYNE2-220ENST00000555612 LINC00311Q8N616 119 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 C8orf49Q96NF6 230 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 COL4A4P53420 1690 aaPredicted RBP6.55□□□□□ -1.36
SYNE2-220ENST00000555612 ZNF407Q9C0G0 2248 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 A0A0J9YY99 117 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 CDKN1BP46527 198 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 GAGE6Q13070 117 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 VWC2Q2TAL6 325 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 LINC00479Q96M42 142 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 CTSZQ9UBR2 303 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 IGHV7-4-1A0A0J9YVY3 117 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 HOXD3P31249 432 aaPredicted RBP6.55□□□□□ -1.36
SYNE2-220ENST00000555612 PRIMA1Q86XR5 153 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 AMN1Q8IY45 258 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 ZNRF2Q8NHG8 242 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 TMEM14BQ9NUH8 114 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 WDR81Q562E7 1941 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 TMEM238C9JI98 176 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 PLEKHB2Q96CS7 222 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 SPXQ9BT56 116 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 SPCS1Q9Y6A9 102 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 ARFGEF3Q5TH69 2177 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 NUP35Q8NFH5 326 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 OR2K2Q8NGT1 345 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 RMI2Q96E14 147 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 GSN-AS1Q9NRJ2 163 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 LAMTOR3Q9UHA4 124 aa6.55□□□□□ -1.36
SYNE2-220ENST00000555612 WNK2Q9Y3S1 2297 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 C10orf91Q5T1B1 145 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 C9orf66Q5T8R8 295 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 TTC28Q96AY4 2481 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 LINC01551Q86U37 167 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 TMEM158Q8WZ71 300 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 SLC25A2Q9BXI2 301 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 PTPRQQ9UMZ3 2332 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 ZNF134P52741 427 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 NCOR1P1Q9H4R4 102 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 KAAG1Q9UBP8 84 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 FRMPD3Q5JV73 1810 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 H3BUT2 72 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 PFN1P07737 140 aaKnown RBP6.54□□□□□ -1.36
SYNE2-220ENST00000555612 C10orf105Q8TEF2 133 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 C1orf194Q5T5A4 169 aa6.54□□□□□ -1.36
SYNE2-220ENST00000555612 SLURP1P55000 103 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 LY6G5BQ8NDX9 201 aa6.53□□□□□ -1.36
SYNE2-220ENST00000555612 ZNF625Q96I27 306 aaPredicted RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms