RNA–Protein interactions for RNA: ENST00000554776.5

SCFD1-213, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-213ENST00000554776 VMA21Q3ZAQ7 101 aa0.8□□□□□ -2.28
SCFD1-213ENST00000554776 HRCT1Q6UXD1 115 aa0.8□□□□□ -2.28
SCFD1-213ENST00000554776 PHF5AQ7RTV0 110 aaKnown RBP0.8□□□□□ -2.28
SCFD1-213ENST00000554776 AMELYQ99218 206 aa0.8□□□□□ -2.28
SCFD1-213ENST00000554776 WFDC10AQ9H1F0 79 aa0.8□□□□□ -2.28
SCFD1-213ENST00000554776 NUBP2Q9Y5Y2 271 aa0.8□□□□□ -2.28
SCFD1-213ENST00000554776 ADGBQ8N7X0 1667 aa0.8□□□□□ -2.28
SCFD1-213ENST00000554776 PEAK1Q9H792 1746 aa0.8□□□□□ -2.28
SCFD1-213ENST00000554776 SIP14410 1827 aa0.8□□□□□ -2.28
SCFD1-213ENST00000554776 PIK3C2AO00443 1686 aa0.79□□□□□ -2.28
SCFD1-213ENST00000554776 KPNA4O00629 521 aaPredicted RBP0.79□□□□□ -2.28
SCFD1-213ENST00000554776 IFNA21P01568 189 aa0.79□□□□□ -2.28
SCFD1-213ENST00000554776 CIRBPQ14011 172 aaKnown RBP0.79□□□□□ -2.28
SCFD1-213ENST00000554776 TEX29Q8N6K0 151 aa0.79□□□□□ -2.28
SCFD1-213ENST00000554776 ZNF431Q8TF32 576 aaPredicted RBP0.79□□□□□ -2.28
SCFD1-213ENST00000554776 EFCAB11Q9BUY7 163 aa0.79□□□□□ -2.28
SCFD1-213ENST00000554776 CCDC32Q9BV29 185 aa0.79□□□□□ -2.28
SCFD1-213ENST00000554776 ATPIF1Q9UII2 106 aa0.79□□□□□ -2.28
SCFD1-213ENST00000554776 TRAPPC2LQ9UL33 140 aa0.79□□□□□ -2.28
SCFD1-213ENST00000554776 TNFSF18Q9UNG2 199 aa0.79□□□□□ -2.28
SCFD1-213ENST00000554776 COL1A1P02452 1464 aaPredicted RBP0.79□□□□□ -2.28
SCFD1-213ENST00000554776 ANKRD31Q8N7Z5 1873 aa0.78□□□□□ -2.28
SCFD1-213ENST00000554776 NUP210Q8TEM1 1887 aaPredicted RBP0.78□□□□□ -2.28
SCFD1-213ENST00000554776 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.78□□□□□ -2.28
SCFD1-213ENST00000554776 TRAV23DV6A0A075B6W5 121 aa0.78□□□□□ -2.28
SCFD1-213ENST00000554776 LYRM1O43325 122 aa0.78□□□□□ -2.28
SCFD1-213ENST00000554776 BCL2P10415 239 aa0.78□□□□□ -2.28
SCFD1-213ENST00000554776 RPL7P18124 248 aaKnown RBP0.78□□□□□ -2.28
SCFD1-213ENST00000554776 EFNA4P52798 201 aa0.78□□□□□ -2.28
SCFD1-213ENST00000554776 PRB3Q04118 309 aaPredicted RBP0.78□□□□□ -2.28
SCFD1-213ENST00000554776 HAGHLQ6PII5 290 aaPredicted RBP0.78□□□□□ -2.28
SCFD1-213ENST00000554776 OR5H6Q8NGV6 325 aa0.78□□□□□ -2.28
SCFD1-213ENST00000554776 ISOC1Q96CN7 298 aa0.78□□□□□ -2.28
SCFD1-213ENST00000554776 LIMD2Q9BT23 127 aa0.78□□□□□ -2.28
SCFD1-213ENST00000554776 MRPL40Q9NQ50 206 aaKnown RBP0.78□□□□□ -2.28
SCFD1-213ENST00000554776 LAMTOR3Q9UHA4 124 aa0.78□□□□□ -2.28
SCFD1-213ENST00000554776 SMPXQ9UHP9 88 aa0.78□□□□□ -2.28
SCFD1-213ENST00000554776 TPRKBQ9Y3C4 175 aa0.78□□□□□ -2.28
SCFD1-213ENST00000554776 RFX7Q2KHR2 1363 aa0.78□□□□□ -2.28
SCFD1-213ENST00000554776 RTL9Q8NET4 1388 aa0.78□□□□□ -2.28
SCFD1-213ENST00000554776 NISCHQ9Y2I1 1504 aa0.78□□□□□ -2.28
SCFD1-213ENST00000554776 MYO18AQ92614 2054 aaKnown RBP0.77□□□□□ -2.29
SCFD1-213ENST00000554776 A0A096LPI6 279 aa0.77□□□□□ -2.29
SCFD1-213ENST00000554776 H0YJX3 145 aa0.77□□□□□ -2.29
SCFD1-213ENST00000554776 FABP4P15090 132 aa0.77□□□□□ -2.29
SCFD1-213ENST00000554776 SDC2P34741 201 aa0.77□□□□□ -2.29
SCFD1-213ENST00000554776 MIR22HGQ0VDD5 57 aa0.77□□□□□ -2.29
SCFD1-213ENST00000554776 DIAPH2-AS1Q14236 149 aa0.77□□□□□ -2.29
SCFD1-213ENST00000554776 FOXI2Q6ZQN5 318 aa0.77□□□□□ -2.29
SCFD1-213ENST00000554776 ZCCHC23Q6ZST2 131 aa0.77□□□□□ -2.29
SCFD1-213ENST00000554776 SMIM15Q7Z3B0 74 aa0.77□□□□□ -2.29
SCFD1-213ENST00000554776 PLPP5Q8NEB5 264 aa0.77□□□□□ -2.29
SCFD1-213ENST00000554776 THEM6Q8WUY1 208 aa0.77□□□□□ -2.29
SCFD1-213ENST00000554776 OR4C12Q96R67 309 aa0.77□□□□□ -2.29
SCFD1-213ENST00000554776 TRAPPC8Q9Y2L5 1435 aa0.77□□□□□ -2.29
SCFD1-213ENST00000554776 FREM3P0C091 2139 aa0.77□□□□□ -2.29
SCFD1-213ENST00000554776 C5orf58C9J3I9 102 aa0.76□□□□□ -2.29
SCFD1-213ENST00000554776 E7EQ34 232 aa0.76□□□□□ -2.29
SCFD1-213ENST00000554776 JMJD7-PLA2G4BH0Y9G9 81 aa0.76□□□□□ -2.29
SCFD1-213ENST00000554776 PFDN1O60925 122 aa0.76□□□□□ -2.29
SCFD1-213ENST00000554776 POLR2HP52434 150 aaKnown RBP0.76□□□□□ -2.29
SCFD1-213ENST00000554776 LINC00305Q7Z4B0 112 aa0.76□□□□□ -2.29
SCFD1-213ENST00000554776 DIRC1Q969H9 104 aa0.76□□□□□ -2.29
SCFD1-213ENST00000554776 PRELID3AQ96N28 172 aa0.76□□□□□ -2.29
SCFD1-213ENST00000554776 FKBP11Q9NYL4 201 aa0.76□□□□□ -2.29
SCFD1-213ENST00000554776 LAMTOR2Q9Y2Q5 125 aa0.76□□□□□ -2.29
SCFD1-213ENST00000554776 MED31Q9Y3C7 131 aa0.76□□□□□ -2.29
SCFD1-213ENST00000554776 TET1Q8NFU7 2136 aa0.76□□□□□ -2.29
SCFD1-213ENST00000554776 M0QZK8 103 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 S100GP29377 79 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 NDUFA6P56556 154 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 B2MP61769 119 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 TFAMQ00059 246 aaKnown RBP0.75□□□□□ -2.29
SCFD1-213ENST00000554776 TMEM128Q5BJH2 165 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 SAMD13Q5VXD3 122 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 LINC00269Q8N2A0 174 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 Q8N6K4 173 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 OR4B1Q8NGF8 309 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 OR10AG1Q8NH19 301 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 CLEC2BQ92478 149 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 PSMF1Q92530 271 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 CST11Q9H112 138 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 TCEAL2Q9H3H9 227 aaPredicted RBP0.75□□□□□ -2.29
SCFD1-213ENST00000554776 CENPHQ9H3R5 247 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 NDUFAF1Q9Y375 327 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 ZFC3H1O60293 1989 aaKnown RBP0.75□□□□□ -2.29
SCFD1-213ENST00000554776 LAMA4Q16363 1823 aa0.75□□□□□ -2.29
SCFD1-213ENST00000554776 IGLV3-32A0A0A0MS00 114 aa0.74□□□□□ -2.29
SCFD1-213ENST00000554776 C3orf85A0A1B0GTC6 90 aa0.74□□□□□ -2.29
SCFD1-213ENST00000554776 CD14P08571 375 aa0.74□□□□□ -2.29
SCFD1-213ENST00000554776 MRPS36P82909 103 aaKnown RBP0.74□□□□□ -2.29
SCFD1-213ENST00000554776 NEDD8Q15843 81 aa0.74□□□□□ -2.29
SCFD1-213ENST00000554776 BRK1Q8WUW1 75 aa0.74□□□□□ -2.29
SCFD1-213ENST00000554776 CCDC115Q96NT0 180 aa0.74□□□□□ -2.29
SCFD1-213ENST00000554776 DLC1Q96QB1 1528 aa0.74□□□□□ -2.29
SCFD1-213ENST00000554776 TCOF1Q13428 1488 aaKnown RBP0.73□□□□□ -2.29
SCFD1-213ENST00000554776 ERBINQ96RT1 1412 aa0.73□□□□□ -2.29
SCFD1-213ENST00000554776 KIAA1107Q9UPP5 1409 aa0.73□□□□□ -2.29
SCFD1-213ENST00000554776 FANCMQ8IYD8 2048 aa0.73□□□□□ -2.29
SCFD1-213ENST00000554776 TRAV13-1A0A0B4J241 112 aa0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms