RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 OBSCN-AS1Q96MR7 158 aa1.69□□□□□ -2.14
SCFD1-209ENST00000553280 PRELID3AQ96N28 172 aa1.69□□□□□ -2.14
SCFD1-209ENST00000553280 HMCN1Q96RW7 5635 aa1.69□□□□□ -2.14
SCFD1-209ENST00000553280 MYH10P35580 1976 aa1.68□□□□□ -2.14
SCFD1-209ENST00000553280 TRBV27A0A0K0K1C4 114 aa1.68□□□□□ -2.14
SCFD1-209ENST00000553280 LOC107984640A0A0U1RRK4 108 aa1.68□□□□□ -2.14
SCFD1-209ENST00000553280 C9orf170A2RU37 121 aa1.68□□□□□ -2.14
SCFD1-209ENST00000553280 ARL5CA6NH57 179 aa1.68□□□□□ -2.14
SCFD1-209ENST00000553280 C5orf67F2Z3F1 127 aa1.68□□□□□ -2.14
SCFD1-209ENST00000553280 J3KT08 172 aa1.68□□□□□ -2.14
SCFD1-209ENST00000553280 RPS28P62857 69 aaKnown RBP1.68□□□□□ -2.14
SCFD1-209ENST00000553280 CIRBPQ14011 172 aaKnown RBP1.68□□□□□ -2.14
SCFD1-209ENST00000553280 VMA21Q3ZAQ7 101 aa1.68□□□□□ -2.14
SCFD1-209ENST00000553280 LINC00526Q96FQ7 95 aa1.68□□□□□ -2.14
SCFD1-209ENST00000553280 MRPL57Q9BQC6 102 aaKnown RBP1.68□□□□□ -2.14
SCFD1-209ENST00000553280 ZFP30Q9Y2G7 519 aa1.68□□□□□ -2.14
SCFD1-209ENST00000553280 A2MP01023 1474 aa1.68□□□□□ -2.14
SCFD1-209ENST00000553280 TNRC6BQ9UPQ9 1833 aaKnown RBP1.68□□□□□ -2.14
SCFD1-209ENST00000553280 MYO5AQ9Y4I1 1855 aaKnown RBP1.67□□□□□ -2.14
SCFD1-209ENST00000553280 MUC6Q6W4X9 2439 aa1.67□□□□□ -2.14
SCFD1-209ENST00000553280 MYOFQ9NZM1 2061 aa1.67□□□□□ -2.14
SCFD1-209ENST00000553280 ARFGEF3Q5TH69 2177 aa1.67□□□□□ -2.14
SCFD1-209ENST00000553280 TRAV13-1A0A0B4J241 112 aa1.67□□□□□ -2.14
SCFD1-209ENST00000553280 F8W1H4 67 aa1.67□□□□□ -2.14
SCFD1-209ENST00000553280 NUPR1O60356 82 aa1.67□□□□□ -2.14
SCFD1-209ENST00000553280 COX7CP15954 63 aa1.67□□□□□ -2.14
SCFD1-209ENST00000553280 GDF5OSQ5U4N7 250 aa1.67□□□□□ -2.14
SCFD1-209ENST00000553280 TEN1Q86WV5 123 aa1.67□□□□□ -2.14
SCFD1-209ENST00000553280 GKN2Q86XP6 184 aa1.67□□□□□ -2.14
SCFD1-209ENST00000553280 OR4C12Q96R67 309 aa1.67□□□□□ -2.14
SCFD1-209ENST00000553280 SPANXA1Q9NS26 97 aa1.67□□□□□ -2.14
SCFD1-209ENST00000553280 TPRKBQ9Y3C4 175 aa1.67□□□□□ -2.14
SCFD1-209ENST00000553280 CECR2Q9BXF3 1484 aa1.67□□□□□ -2.14
SCFD1-209ENST00000553280 DLC1Q96QB1 1528 aa1.66□□□□□ -2.14
SCFD1-209ENST00000553280 COL24A1Q17RW2 1714 aa1.66□□□□□ -2.14
SCFD1-209ENST00000553280 CCL25O15444 150 aa1.66□□□□□ -2.14
SCFD1-209ENST00000553280 SCGB1A1P11684 91 aa1.66□□□□□ -2.14
SCFD1-209ENST00000553280 SRP9P49458 86 aaKnown RBP1.66□□□□□ -2.14
SCFD1-209ENST00000553280 PSG9Q00887 426 aa1.66□□□□□ -2.14
SCFD1-209ENST00000553280 SPRNQ5BIV9 151 aa1.66□□□□□ -2.14
SCFD1-209ENST00000553280 TEX29Q8N6K0 151 aa1.66□□□□□ -2.14
SCFD1-209ENST00000553280 TMEM229BQ8NBD8 167 aa1.66□□□□□ -2.14
SCFD1-209ENST00000553280 MORN4Q8NDC4 146 aa1.66□□□□□ -2.14
SCFD1-209ENST00000553280 OR10AG1Q8NH19 301 aa1.66□□□□□ -2.14
SCFD1-209ENST00000553280 PSMF1Q92530 271 aa1.66□□□□□ -2.14
SCFD1-209ENST00000553280 MYLKQ15746 1914 aa1.66□□□□□ -2.14
SCFD1-209ENST00000553280 CEP192Q8TEP8 1941 aa1.66□□□□□ -2.14
SCFD1-209ENST00000553280 RP1L1Q8IWN7 2480 aaPredicted RBP1.65□□□□□ -2.14
SCFD1-209ENST00000553280 ANKRD31Q8N7Z5 1873 aa1.65□□□□□ -2.14
SCFD1-209ENST00000553280 CACNA1BQ00975 2339 aa1.65□□□□□ -2.15
SCFD1-209ENST00000553280 A0A1B0GX51 115 aa1.65□□□□□ -2.15
SCFD1-209ENST00000553280 ARL14EPLP0DKL9 152 aa1.65□□□□□ -2.15
SCFD1-209ENST00000553280 ZNF25P17030 456 aaPredicted RBP1.65□□□□□ -2.15
SCFD1-209ENST00000553280 MAXP61244 160 aa1.65□□□□□ -2.15
SCFD1-209ENST00000553280 NIT2Q9NQR4 276 aa1.65□□□□□ -2.15
SCFD1-209ENST00000553280 CBLN4Q9NTU7 201 aa1.65□□□□□ -2.15
SCFD1-209ENST00000553280 CRCT1Q9UGL9 99 aa1.65□□□□□ -2.15
SCFD1-209ENST00000553280 FAM135BQ49AJ0 1406 aa1.65□□□□□ -2.15
SCFD1-209ENST00000553280 DIDO1Q9BTC0 2240 aaKnown RBP1.64□□□□□ -2.15
SCFD1-209ENST00000553280 TRAV36DV7A0A075B6V5 113 aa1.64□□□□□ -2.15
SCFD1-209ENST00000553280 C5orf58C9J3I9 102 aa1.64□□□□□ -2.15
SCFD1-209ENST00000553280 H3BMG7 143 aa1.64□□□□□ -2.15
SCFD1-209ENST00000553280 H3BRM9 83 aa1.64□□□□□ -2.15
SCFD1-209ENST00000553280 DNAL4O96015 105 aa1.64□□□□□ -2.15
SCFD1-209ENST00000553280 OR8B8Q15620 311 aa1.64□□□□□ -2.15
SCFD1-209ENST00000553280 LINC00322Q6ZN03 302 aaPredicted RBP1.64□□□□□ -2.15
SCFD1-209ENST00000553280 LINC00269Q8N2A0 174 aa1.64□□□□□ -2.15
SCFD1-209ENST00000553280 ODF3Q96PU9 254 aa1.64□□□□□ -2.15
SCFD1-209ENST00000553280 AIF1LQ9BQI0 150 aa1.64□□□□□ -2.15
SCFD1-209ENST00000553280 NUP210Q8TEM1 1887 aaPredicted RBP1.64□□□□□ -2.15
SCFD1-209ENST00000553280 OVOS2A0A0G2JMS6 1433 aa1.64□□□□□ -2.15
SCFD1-209ENST00000553280 MGAMO43451 1857 aa1.63□□□□□ -2.15
SCFD1-209ENST00000553280 SAA1P0DJI8 122 aaPredicted RBP1.63□□□□□ -2.15
SCFD1-209ENST00000553280 TPT1P13693 172 aaKnown RBP1.63□□□□□ -2.15
SCFD1-209ENST00000553280 ALX1Q15699 326 aa1.63□□□□□ -2.15
SCFD1-209ENST00000553280 FAM19A2Q8N3H0 131 aa1.63□□□□□ -2.15
SCFD1-209ENST00000553280 NAT14Q8WUY8 206 aa1.63□□□□□ -2.15
SCFD1-209ENST00000553280 CLEC2BQ92478 149 aa1.63□□□□□ -2.15
SCFD1-209ENST00000553280 CST11Q9H112 138 aa1.63□□□□□ -2.15
SCFD1-209ENST00000553280 SPANXCQ9NY87 97 aa1.63□□□□□ -2.15
SCFD1-209ENST00000553280 TMEM14CQ9P0S9 112 aa1.63□□□□□ -2.15
SCFD1-209ENST00000553280 JPT1Q9UK76 154 aa1.63□□□□□ -2.15
SCFD1-209ENST00000553280 DEGS1O15121 323 aa1.62□□□□□ -2.15
SCFD1-209ENST00000553280 TRACP01848 142 aa1.62□□□□□ -2.15
SCFD1-209ENST00000553280 CRYGSP22914 178 aa1.62□□□□□ -2.15
SCFD1-209ENST00000553280 RPL22P35268 128 aaKnown RBP1.62□□□□□ -2.15
SCFD1-209ENST00000553280 DIAPH2-AS1Q14236 149 aa1.62□□□□□ -2.15
SCFD1-209ENST00000553280 HAGHLQ6PII5 290 aaPredicted RBP1.62□□□□□ -2.15
SCFD1-209ENST00000553280 FOXI2Q6ZQN5 318 aa1.62□□□□□ -2.15
SCFD1-209ENST00000553280 OR8I2Q8N0Y5 310 aa1.62□□□□□ -2.15
SCFD1-209ENST00000553280 OR5A2Q8NGI9 324 aa1.62□□□□□ -2.15
SCFD1-209ENST00000553280 OR5AK2Q8NH90 309 aa1.62□□□□□ -2.15
SCFD1-209ENST00000553280 BRK1Q8WUW1 75 aa1.62□□□□□ -2.15
SCFD1-209ENST00000553280 TMEM138Q9NPI0 162 aa1.62□□□□□ -2.15
SCFD1-209ENST00000553280 EXPH5Q8NEV8 1989 aa1.61□□□□□ -2.15
SCFD1-209ENST00000553280 MED13Q9UHV7 2174 aa1.61□□□□□ -2.15
SCFD1-209ENST00000553280 PLXNA4Q9HCM2 1894 aa1.61□□□□□ -2.15
SCFD1-209ENST00000553280 M0QZK8 103 aa1.61□□□□□ -2.15
SCFD1-209ENST00000553280 FOXA3P55318 350 aaPredicted RBP1.61□□□□□ -2.15
SCFD1-209ENST00000553280 MIR22HGQ0VDD5 57 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms