RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PRR30Q53SZ7 412 aaPredicted RBP3.84□□□□□ -1.8
LIMA1-214ENST00000552783 CT83Q5H943 113 aa3.84□□□□□ -1.8
LIMA1-214ENST00000552783 LYPD2Q6UXB3 125 aa3.84□□□□□ -1.8
LIMA1-214ENST00000552783 ZNF833PQ6ZTB9 187 aa3.84□□□□□ -1.8
LIMA1-214ENST00000552783 SEM1Q6ZVN7 128 aa3.84□□□□□ -1.8
LIMA1-214ENST00000552783 OR5AN1Q8NGI8 311 aa3.84□□□□□ -1.8
LIMA1-214ENST00000552783 ZNF492Q9P255 531 aa3.84□□□□□ -1.8
LIMA1-214ENST00000552783 WI2-2373I1.2A0A1W2PRP0 233 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 C17orf100A8MU93 164 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 PLP1P60201 277 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 WFDC2Q14508 124 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 GTF2H5Q6ZYL4 71 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 FA2HQ7L5A8 372 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 ZNF575Q86XF7 245 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 OR4C13Q8NGP0 309 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 GFRA4Q9GZZ7 299 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 JKAMPQ9P055 326 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 ZNF292O60281 2723 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 A1L4Q6 167 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 MBD3L4A6NDZ8 208 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-214ENST00000552783 MBD3L3A6NE82 208 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-214ENST00000552783 MBD3L5A6NJ08 208 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-214ENST00000552783 NCBP2LA6PVI3 153 aaKnown RBP3.83□□□□□ -1.8
LIMA1-214ENST00000552783 CIDEAO60543 219 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 SH2D6Q7Z4S9 175 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 MBD3L2Q8NHZ7 208 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-214ENST00000552783 FAM222BQ8WU58 562 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 AP1S3Q96PC3 154 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 MSRB1Q9NZV6 116 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 NPYP01303 97 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 CRYGCP07315 174 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 GCSHP23434 173 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 RPL27AP46776 148 aaKnown RBP3.83□□□□□ -1.8
LIMA1-214ENST00000552783 PSG3Q16557 428 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 XP32Q5T750 250 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 SAMD5Q5TGI4 173 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 SAMD13Q5VXD3 122 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 TMEM200BQ69YZ2 307 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 LYZL1Q6UWQ5 148 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 AMTNQ6UX39 209 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 ZNF788Q6ZQV5 615 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 LCNL1Q6ZST4 164 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 OSR1Q8TAX0 266 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-214ENST00000552783 TMEM133Q9H2Q1 129 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 FBXL15Q9H469 300 aa3.83□□□□□ -1.8
LIMA1-214ENST00000552783 A0A0G2JNJ9 132 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 NDUFS7O75251 213 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 HOXB4P17483 251 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-214ENST00000552783 ADIPOQQ15848 244 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 FAM162BQ5T6X4 162 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 TMEM167AQ8TBQ9 72 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 PHLDA1Q8WV24 401 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-214ENST00000552783 Q9UFV3 132 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 TSSC4Q9Y5U2 329 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-214ENST00000552783 SOX21Q9Y651 276 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-214ENST00000552783 LINC00312Q9Y6C7 94 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 A6NDN8 102 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 CD3EP07766 207 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 GATA1P15976 413 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-214ENST00000552783 CSN1S1P47710 185 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 ATP5G2Q06055 141 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 HSD52Q0P140 79 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 IGFL4Q6B9Z1 124 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 TMEM75Q8N9X5 138 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 FAM57AQ8TBR7 257 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 SLC25A39Q9BZJ4 359 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-214ENST00000552783 LINC00574Q9H8X3 128 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 HHLA3Q9XRX5 114 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 MRPL51Q4U2R6 128 aaKnown RBP3.82□□□□□ -1.8
LIMA1-214ENST00000552783 C8orf46Q8TAG6 207 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 PRELID3AQ96N28 172 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 NCOR1P1Q9H4R4 102 aa3.82□□□□□ -1.8
LIMA1-214ENST00000552783 CSMD2Q7Z408 3487 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 TMEM238LA0A1B0GVL6 79 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 H3BMG7 143 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 IGHV3-23P01764 117 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 ZNF80P51504 273 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-214ENST00000552783 LGALS9BQ3B8N2 356 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 LGALS9CQ6DKI2 356 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 CCDC144NLQ6NUI1 221 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 SIGLEC15Q6ZMC9 328 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 Q6ZS92 163 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 ARPC1AQ92747 370 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 ZNF414Q96IQ9 312 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 CTSZQ9UBR2 303 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 SETD2Q9BYW2 2564 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-214ENST00000552783 PTPN13Q12923 2485 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 TLN2Q9Y4G6 2542 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-214ENST00000552783 INS-IGF2F8WCM5 200 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 IGKV1-17P01599 117 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 EVI2AP22794 236 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 PPIFP30405 207 aaKnown RBP3.81□□□□□ -1.8
LIMA1-214ENST00000552783 ETDBQ3ZM63 59 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 KLF17Q5JT82 389 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-214ENST00000552783 ZNF562Q6V9R5 426 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 GTSCR1Q86UQ5 136 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 MAPKAPK5-AS1Q8N8E1 139 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 PRSS33Q8NF86 280 aa3.81□□□□□ -1.8
LIMA1-214ENST00000552783 Q8TAT8 98 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms