RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 TEX43Q6ZNM6 134 aa11.1□□□□□ -0.63
VPS33A-209ENST00000544349 Q86TA4 180 aa11.1□□□□□ -0.63
VPS33A-209ENST00000544349 Q8N976 141 aa11.1□□□□□ -0.63
VPS33A-209ENST00000544349 C17orf77Q96MU5 243 aa11.1□□□□□ -0.63
VPS33A-209ENST00000544349 ASCL2Q99929 193 aa11.1□□□□□ -0.63
VPS33A-209ENST00000544349 CHRDL1Q9BU40 450 aa11.1□□□□□ -0.63
VPS33A-209ENST00000544349 MAST4O15021 2626 aa11.1□□□□□ -0.63
VPS33A-209ENST00000544349 HIST1H1EP10412 219 aaKnown RBP11.09□□□□□ -0.63
VPS33A-209ENST00000544349 C18orf32Q8TCD1 76 aa11.09□□□□□ -0.63
VPS33A-209ENST00000544349 FMC1Q96HJ9 113 aa11.09□□□□□ -0.63
VPS33A-209ENST00000544349 A0A1B0GXF2 115 aa11.09□□□□□ -0.63
VPS33A-209ENST00000544349 C19orf71A6NCJ1 209 aa11.09□□□□□ -0.63
VPS33A-209ENST00000544349 IGLV2-11P01706 119 aa11.09□□□□□ -0.63
VPS33A-209ENST00000544349 GPR183P32249 361 aa11.09□□□□□ -0.63
VPS33A-209ENST00000544349 AMTP48728 403 aa11.09□□□□□ -0.63
VPS33A-209ENST00000544349 CAMPP49913 170 aa11.09□□□□□ -0.63
VPS33A-209ENST00000544349 GTSF1Q8WW33 167 aa11.09□□□□□ -0.63
VPS33A-209ENST00000544349 EEF1AKMT3Q96AZ1 226 aa11.09□□□□□ -0.63
VPS33A-209ENST00000544349 CCDC140Q96MF4 163 aa11.09□□□□□ -0.63
VPS33A-209ENST00000544349 RPP21Q9H633 154 aaKnown RBP11.09□□□□□ -0.63
VPS33A-209ENST00000544349 OTORQ9NRC9 128 aa11.09□□□□□ -0.63
VPS33A-209ENST00000544349 TMEM14CQ9P0S9 112 aa11.09□□□□□ -0.63
VPS33A-209ENST00000544349 TRBV7-1A0A0A6YYK4 115 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 FAM223BA6NKX1 122 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 CYSRT1A8MQ03 144 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 H3BRN7 92 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 BRI3O95415 125 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 CLEC3BP05452 202 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 ATP5G2Q06055 141 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 FAM223AQ8IWN6 122 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 FAM19A2Q8N3H0 131 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 SIGLECL1Q8N7X8 197 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 SHANK2-AS3Q9BTD1 123 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 NRN1Q9NPD7 142 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 VPREB3Q9UKI3 123 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 H3BUA1 57 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 TRGV3P03979 118 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 KRTDAPP60985 99 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 CLEC19AQ6UXS0 136 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 GOLT1AQ6ZVE7 132 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 NIT1Q86X76 327 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 SMIM12Q96EX1 92 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 PRSS22Q9GZN4 317 aa11.08□□□□□ -0.64
VPS33A-209ENST00000544349 PDZD2O15018 2839 aa11.07□□□□□ -0.64
VPS33A-209ENST00000544349 ZNF324O75467 553 aaPredicted RBP11.07□□□□□ -0.64
VPS33A-209ENST00000544349 RASL11AQ6T310 242 aa11.07□□□□□ -0.64
VPS33A-209ENST00000544349 ZNF414Q96IQ9 312 aa11.07□□□□□ -0.64
VPS33A-209ENST00000544349 ZNF492Q9P255 531 aa11.07□□□□□ -0.64
VPS33A-209ENST00000544349 ZNF580Q9UK33 172 aa11.07□□□□□ -0.64
VPS33A-209ENST00000544349 HOXA3O43365 443 aaPredicted RBP11.06□□□□□ -0.64
VPS33A-209ENST00000544349 TEX29Q8N6K0 151 aa11.06□□□□□ -0.64
VPS33A-209ENST00000544349 ATP6V0BQ99437 205 aa11.06□□□□□ -0.64
VPS33A-209ENST00000544349 C2orf88Q9BSF0 95 aa11.06□□□□□ -0.64
VPS33A-209ENST00000544349 PAM16Q9Y3D7 125 aa11.06□□□□□ -0.64
VPS33A-209ENST00000544349 CREBBPQ92793 2442 aa11.06□□□□□ -0.64
VPS33A-209ENST00000544349 ZANQ9Y493 2812 aa11.06□□□□□ -0.64
VPS33A-209ENST00000544349 ZNF785A8K8V0 405 aa11.06□□□□□ -0.64
VPS33A-209ENST00000544349 MRPS12O15235 138 aaKnown RBP11.06□□□□□ -0.64
VPS33A-209ENST00000544349 P01737 135 aa11.06□□□□□ -0.64
VPS33A-209ENST00000544349 IGLC2P0DOY2 106 aa11.06□□□□□ -0.64
VPS33A-209ENST00000544349 S100A7AQ86SG5 101 aa11.06□□□□□ -0.64
VPS33A-209ENST00000544349 PRNTQ86SH4 94 aa11.06□□□□□ -0.64
VPS33A-209ENST00000544349 SNHG12Q9BXW3 62 aa11.06□□□□□ -0.64
VPS33A-209ENST00000544349 HECTD1Q9ULT8 2610 aa11.05□□□□□ -0.64
VPS33A-209ENST00000544349 TRBV19A0A075B6N1 114 aa11.05□□□□□ -0.64
VPS33A-209ENST00000544349 CFHR3Q02985 330 aa11.05□□□□□ -0.64
VPS33A-209ENST00000544349 SIGLEC15Q6ZMC9 328 aa11.05□□□□□ -0.64
VPS33A-209ENST00000544349 IL17RELQ6ZVW7 336 aa11.05□□□□□ -0.64
VPS33A-209ENST00000544349 PGLYRP4Q96LB8 373 aa11.05□□□□□ -0.64
VPS33A-209ENST00000544349 IGLV1-40P01703 118 aa11.05□□□□□ -0.64
VPS33A-209ENST00000544349 NTF3P20783 257 aa11.05□□□□□ -0.64
VPS33A-209ENST00000544349 KRTAP1-1Q07627 177 aa11.05□□□□□ -0.64
VPS33A-209ENST00000544349 BPIFA4PQ86YQ2 179 aa11.05□□□□□ -0.64
VPS33A-209ENST00000544349 OR2D3Q8NGH3 330 aa11.05□□□□□ -0.64
VPS33A-209ENST00000544349 USMG5Q96IX5 58 aa11.05□□□□□ -0.64
VPS33A-209ENST00000544349 ALKBH7Q9BT30 221 aaPredicted RBP11.05□□□□□ -0.64
VPS33A-209ENST00000544349 IGHV3-35A0A0C4DH35 117 aa11.04□□□□□ -0.64
VPS33A-209ENST00000544349 TMEM95Q3KNT9 176 aa11.04□□□□□ -0.64
VPS33A-209ENST00000544349 CT83Q5H943 113 aa11.04□□□□□ -0.64
VPS33A-209ENST00000544349 ATP5L2Q7Z4Y8 100 aa11.04□□□□□ -0.64
VPS33A-209ENST00000544349 ZC2HC1AQ96GY0 325 aa11.04□□□□□ -0.64
VPS33A-209ENST00000544349 KLK15Q9H2R5 256 aa11.04□□□□□ -0.64
VPS33A-209ENST00000544349 ZNF469Q96JG9 3925 aaPredicted RBP11.04□□□□□ -0.64
VPS33A-209ENST00000544349 DIRC3C9JPN6 131 aa11.03□□□□□ -0.64
VPS33A-209ENST00000544349 CD5LO43866 347 aa11.03□□□□□ -0.64
VPS33A-209ENST00000544349 PF4V1P10720 104 aa11.03□□□□□ -0.64
VPS33A-209ENST00000544349 HBBP68871 147 aa11.03□□□□□ -0.64
VPS33A-209ENST00000544349 URB1-AS1Q96HZ7 61 aa11.03□□□□□ -0.64
VPS33A-209ENST00000544349 C20orf144Q9BQM9 153 aa11.03□□□□□ -0.64
VPS33A-209ENST00000544349 VAMP8Q9BV40 100 aa11.03□□□□□ -0.64
VPS33A-209ENST00000544349 ZFAND3Q9H8U3 227 aa11.03□□□□□ -0.64
VPS33A-209ENST00000544349 RABAC1Q9UI14 185 aa11.03□□□□□ -0.64
VPS33A-209ENST00000544349 NPIPB6E9PJ23 425 aa11.03□□□□□ -0.64
VPS33A-209ENST00000544349 M0R3E3 92 aa11.03□□□□□ -0.64
VPS33A-209ENST00000544349 C3orf79P0CE67 100 aa11.03□□□□□ -0.64
VPS33A-209ENST00000544349 KLF5Q13887 457 aaPredicted RBP11.03□□□□□ -0.64
VPS33A-209ENST00000544349 ITPR3Q14573 2671 aa11.02□□□□□ -0.64
VPS33A-209ENST00000544349 A8MWL6 223 aa11.02□□□□□ -0.64
VPS33A-209ENST00000544349 M0QZ24 198 aa11.02□□□□□ -0.64
VPS33A-209ENST00000544349 C16orf54Q6UWD8 224 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms