RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 BCL7BQ9BQE9 202 aa12.12□□□□□ -0.47
CLSTN3-214ENST00000542663 PYGO2Q9BRQ0 406 aa12.12□□□□□ -0.47
CLSTN3-214ENST00000542663 PSENENQ9NZ42 101 aa12.12□□□□□ -0.47
CLSTN3-214ENST00000542663 NOL3O60936 208 aaKnown RBP12.11□□□□□ -0.47
CLSTN3-214ENST00000542663 TMBIM6P55061 237 aa12.11□□□□□ -0.47
CLSTN3-214ENST00000542663 ICAM4Q14773 271 aa12.11□□□□□ -0.47
CLSTN3-214ENST00000542663 S100A7AQ86SG5 101 aa12.11□□□□□ -0.47
CLSTN3-214ENST00000542663 SAT2Q96F10 170 aaPredicted RBP12.11□□□□□ -0.47
CLSTN3-214ENST00000542663 NPVFQ9HCQ7 196 aa12.11□□□□□ -0.47
CLSTN3-214ENST00000542663 GSN-AS1Q9NRJ2 163 aa12.11□□□□□ -0.47
CLSTN3-214ENST00000542663 CCDC59Q9P031 241 aaKnown RBP12.11□□□□□ -0.47
CLSTN3-214ENST00000542663 TRGV2A0A075B6R0 118 aa12.1□□□□□ -0.47
CLSTN3-214ENST00000542663 NPIPB6E9PJ23 425 aa12.1□□□□□ -0.47
CLSTN3-214ENST00000542663 IFNA5P01569 189 aa12.1□□□□□ -0.47
CLSTN3-214ENST00000542663 TEPPQ6URK8 271 aa12.1□□□□□ -0.47
CLSTN3-214ENST00000542663 TRIM63Q969Q1 353 aa12.1□□□□□ -0.47
CLSTN3-214ENST00000542663 ODF3Q96PU9 254 aa12.1□□□□□ -0.47
CLSTN3-214ENST00000542663 FUT9Q9Y231 359 aa12.1□□□□□ -0.47
CLSTN3-214ENST00000542663 FNDC10F2Z333 226 aa12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 H3BMQ9 156 aa12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 H3BQ15 152 aa12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 IGLC2P0DOY2 106 aa12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 TNFSF8P32971 234 aa12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 FAUP35544 74 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 LEPP41159 167 aa12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 C4orf46Q504U0 113 aa12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 PXDC1Q5TGL8 231 aa12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 TMEM14EPQ6UXP3 125 aa12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 BPIFA4PQ86YQ2 179 aa12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 TMEM37Q8WXS4 190 aa12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 SMIM8Q96KF7 97 aa12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 RNF24Q9Y225 148 aa12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 ICOSQ9Y6W8 199 aa12.09□□□□□ -0.47
CLSTN3-214ENST00000542663 FABP12A6NFH5 140 aa12.08□□□□□ -0.48
CLSTN3-214ENST00000542663 SSSCA1O60232 199 aa12.08□□□□□ -0.48
CLSTN3-214ENST00000542663 ZNF324O75467 553 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-214ENST00000542663 METTL15P1P0C7V9 234 aa12.08□□□□□ -0.48
CLSTN3-214ENST00000542663 HAMPP81172 84 aa12.08□□□□□ -0.48
CLSTN3-214ENST00000542663 OPCMLQ14982 345 aa12.08□□□□□ -0.48
CLSTN3-214ENST00000542663 NFE4Q86UQ8 179 aa12.08□□□□□ -0.48
CLSTN3-214ENST00000542663 PXMP4Q9Y6I8 212 aa12.08□□□□□ -0.48
CLSTN3-214ENST00000542663 TRGV1A0A0A0MS02 117 aa12.07□□□□□ -0.48
CLSTN3-214ENST00000542663 AGPAT2O15120 278 aa12.07□□□□□ -0.48
CLSTN3-214ENST00000542663 PAX4O43316 350 aa12.07□□□□□ -0.48
CLSTN3-214ENST00000542663 LYPD5Q6UWN5 251 aa12.07□□□□□ -0.48
CLSTN3-214ENST00000542663 ZNF680Q8NEM1 530 aa12.07□□□□□ -0.48
CLSTN3-214ENST00000542663 SLC25A21Q9BQT8 299 aaPredicted RBP12.07□□□□□ -0.48
CLSTN3-214ENST00000542663 KLF12Q9Y4X4 402 aa12.07□□□□□ -0.48
CLSTN3-214ENST00000542663 GOSR2O14653 212 aa12.06□□□□□ -0.48
CLSTN3-214ENST00000542663 SPINK4O60575 86 aa12.06□□□□□ -0.48
CLSTN3-214ENST00000542663 GCSHP23434 173 aa12.06□□□□□ -0.48
CLSTN3-214ENST00000542663 ARL16Q0P5N6 197 aa12.06□□□□□ -0.48
CLSTN3-214ENST00000542663 ZNF546Q86UE3 836 aa12.06□□□□□ -0.48
CLSTN3-214ENST00000542663 TOMM5Q8N4H5 51 aa12.06□□□□□ -0.48
CLSTN3-214ENST00000542663 ST6GAL2Q96JF0 529 aa12.06□□□□□ -0.48
CLSTN3-214ENST00000542663 LINC00467Q9BRT7 94 aa12.06□□□□□ -0.48
CLSTN3-214ENST00000542663 SLIRPQ9GZT3 109 aaKnown RBP12.06□□□□□ -0.48
CLSTN3-214ENST00000542663 C7orf71A4D174 169 aa12.05□□□□□ -0.48
CLSTN3-214ENST00000542663 SLC25A5P05141 298 aaKnown RBP12.05□□□□□ -0.48
CLSTN3-214ENST00000542663 CD300CQ08708 224 aa12.05□□□□□ -0.48
CLSTN3-214ENST00000542663 ANXA2RQ3ZCQ2 193 aa12.05□□□□□ -0.48
CLSTN3-214ENST00000542663 OR10P1Q8NGE3 313 aa12.05□□□□□ -0.48
CLSTN3-214ENST00000542663 MCFD2Q8NI22 146 aa12.05□□□□□ -0.48
CLSTN3-214ENST00000542663 MGST2Q99735 147 aa12.05□□□□□ -0.48
CLSTN3-214ENST00000542663 MGAT4CQ9UBM8 478 aa12.05□□□□□ -0.48
CLSTN3-214ENST00000542663 DNAH8Q96JB1 4490 aa12.05□□□□□ -0.48
CLSTN3-214ENST00000542663 KLLNB2CW77 178 aa12.04□□□□□ -0.48
CLSTN3-214ENST00000542663 FAM229AH3BQW9 127 aa12.04□□□□□ -0.48
CLSTN3-214ENST00000542663 COX7A2P2O60397 106 aa12.04□□□□□ -0.48
CLSTN3-214ENST00000542663 IGHV3-53P01767 116 aa12.04□□□□□ -0.48
CLSTN3-214ENST00000542663 TCL1AP56279 114 aa12.04□□□□□ -0.48
CLSTN3-214ENST00000542663 BTN1A1Q13410 526 aa12.04□□□□□ -0.48
CLSTN3-214ENST00000542663 Q6ZSN1 163 aa12.04□□□□□ -0.48
CLSTN3-214ENST00000542663 EIF4E3Q8N5X7 224 aaKnown RBP12.04□□□□□ -0.48
CLSTN3-214ENST00000542663 FAM19A4Q96LR4 140 aa12.04□□□□□ -0.48
CLSTN3-214ENST00000542663 PRO0255Q9UI72 69 aa12.04□□□□□ -0.48
CLSTN3-214ENST00000542663 LY96Q9Y6Y9 160 aa12.04□□□□□ -0.48
CLSTN3-214ENST00000542663 TRAV5A0A0B4J249 113 aa12.03□□□□□ -0.48
CLSTN3-214ENST00000542663 C9orf170A2RU37 121 aa12.03□□□□□ -0.48
CLSTN3-214ENST00000542663 CRYBA4P53673 196 aa12.03□□□□□ -0.48
CLSTN3-214ENST00000542663 AP3S2P59780 193 aa12.03□□□□□ -0.48
CLSTN3-214ENST00000542663 ERCC8Q13216 396 aa12.03□□□□□ -0.48
CLSTN3-214ENST00000542663 C10orf113Q5VZT2 155 aa12.03□□□□□ -0.48
CLSTN3-214ENST00000542663 WFDC10BQ8IUB3 73 aa12.03□□□□□ -0.48
CLSTN3-214ENST00000542663 MSRB1Q9NZV6 116 aa12.03□□□□□ -0.48
CLSTN3-214ENST00000542663 CCDC160A6NGH7 325 aa12.02□□□□□ -0.49
CLSTN3-214ENST00000542663 M0R3E3 92 aa12.02□□□□□ -0.49
CLSTN3-214ENST00000542663 FHL2Q14192 279 aa12.02□□□□□ -0.49
CLSTN3-214ENST00000542663 MRPL16Q9NX20 251 aaKnown RBP12.02□□□□□ -0.49
CLSTN3-214ENST00000542663 TP53TG3Q9ULZ0 132 aa12.02□□□□□ -0.49
CLSTN3-214ENST00000542663 V9GYH0 126 aa12.02□□□□□ -0.49
CLSTN3-214ENST00000542663 TRAV9-2A0A087WT02 112 aa12.01□□□□□ -0.49
CLSTN3-214ENST00000542663 PRAF2O60831 178 aa12.01□□□□□ -0.49
CLSTN3-214ENST00000542663 TSC22D2O75157 780 aa12.01□□□□□ -0.49
CLSTN3-214ENST00000542663 UBE2MP61081 183 aaKnown RBP12.01□□□□□ -0.49
CLSTN3-214ENST00000542663 MRPL23Q16540 153 aaKnown RBP12.01□□□□□ -0.49
CLSTN3-214ENST00000542663 GUK1Q16774 197 aa12.01□□□□□ -0.49
CLSTN3-214ENST00000542663 PYDC2Q56P42 97 aa12.01□□□□□ -0.49
CLSTN3-214ENST00000542663 IBA57Q5T440 356 aaKnown RBP12.01□□□□□ -0.49
CLSTN3-214ENST00000542663 Q6ZQT7 251 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms