RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, human

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-215	ENST00000540904	BOLA2-SMG1P6	H3BVE0	249 aa		6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	OR7C2	O60412	319 aa		6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	ZNF253	O75346	499 aa		6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	NDUFB4	O95168	129 aa		6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	AMBP	P02760	352 aa		6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	NBEAP1	P0C6P0	100 aa		6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	NANOS2	P60321	138 aa	Known RBP	6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	ACOT6	Q3I5F7	207 aa	Predicted RBP	6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	ZNF705A	Q6ZN79	300 aa	Predicted RBP	6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	BAP18	Q8IXM2	172 aa		6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	EXOC3-AS1	Q8N2X6	119 aa		6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	OR10J6P	Q8NGY7	276 aa		6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	RNF141	Q8WVD5	230 aa		6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	IGF2BP2-AS1	Q96M15	143 aa		6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	TNFSF18	Q9UNG2	199 aa		6.67	□□□□□ -1.34
SNHG1-215	ENST00000540904	TRAV12-2	A0A075B6T6	113 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904		A0A1W2PPV4	95 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904		G3V3Q6	166 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904		M0R3E3	92 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904	EIF3G	O75821	320 aa	Known RBP eCLIP	6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904	M6PR	P20645	277 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904	ATP6V0C	P27449	155 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904	EMP1	P54849	157 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904	TAS2R45	P59539	299 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904	RAB2A	P61019	212 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904	UBE2L3	P68036	154 aa	Known RBP	6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904	PDE6H	Q13956	83 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904	KHDC3L	Q587J8	217 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904	C1orf158	Q8N1D5	194 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904	FXYD5	Q96DB9	178 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904	TMEM208	Q9BTX3	173 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904	AAMDC	Q9H7C9	122 aa		6.66	□□□□□ -1.34
SNHG1-215	ENST00000540904	BORCS7-ASMT	A0A0B4J1R7	106 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	NUPR2	A6NF83	97 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	SMIM9	A6NGZ8	99 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	HMGB3	O15347	200 aa	Known RBP	6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	ARPC5	O15511	151 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	CRX	O43186	299 aa	Predicted RBP	6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	INS	P01308	110 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	HBE1	P02100	147 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	CDKN1B	P46527	198 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	ICAM4	Q14773	271 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	RPL7L1	Q6DKI1	246 aa	Known RBP	6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	FAM122C	Q6P4D5	195 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	CEMP1	Q6PRD7	247 aa	Predicted RBP	6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	RPP25L	Q8N5L8	163 aa	Known RBP	6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	OR10G4	Q8NGN3	311 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	OR10G9	Q8NGN4	311 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	OR10G7	Q8NGN6	311 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	PHLDA1	Q8WV24	401 aa	Predicted RBP	6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	MRPL53	Q96EL3	112 aa	Known RBP	6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	ZNF503	Q96F45	646 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	PHYHIPL	Q96FC7	376 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	NEU1	Q99519	415 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	SH3BGRL3	Q9H299	93 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	PRELID1	Q9Y255	219 aa		6.65	□□□□□ -1.34
SNHG1-215	ENST00000540904	NPIPB6	E9PJ23	425 aa		6.64	□□□□□ -1.35
SNHG1-215	ENST00000540904	CT45A10	P0DMU9	189 aa		6.64	□□□□□ -1.35
SNHG1-215	ENST00000540904	TSPO	P30536	169 aa		6.64	□□□□□ -1.35
SNHG1-215	ENST00000540904	RAN	P62826	216 aa	Known RBP	6.64	□□□□□ -1.35
SNHG1-215	ENST00000540904	ERCC8	Q13216	396 aa		6.64	□□□□□ -1.35
SNHG1-215	ENST00000540904	RRN3P1	Q2M238	152 aa		6.64	□□□□□ -1.35
SNHG1-215	ENST00000540904	OR2G3	Q8NGZ4	309 aa		6.64	□□□□□ -1.35
SNHG1-215	ENST00000540904	PSMG3	Q9BT73	122 aa	Predicted RBP	6.64	□□□□□ -1.35
SNHG1-215	ENST00000540904	CELA1	Q9UNI1	258 aa		6.64	□□□□□ -1.35
SNHG1-215	ENST00000540904	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904	LOC102723971	A0A1B0GUV8	181 aa		6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904	TMEM189	A5PLL7	270 aa		6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904	ZNF705G	A8MUZ8	300 aa	Predicted RBP	6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904		J3KRW8	73 aa		6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904	IGKV2D-40	P01614	121 aa	Predicted RBP	6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904	PRM2	P04554	102 aa		6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904	HTN1	P15515	57 aa		6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904	SERF2	P84101	59 aa		6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904	KIR3DS1	Q14943	382 aa		6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904	PQLC2	Q6ZP29	291 aa		6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904	ZNF767P	Q75MW2	155 aa		6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904	GNPNAT1	Q96EK6	184 aa	Predicted RBP	6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904	LINC01587	Q99440	93 aa		6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904		Q9H3A6	140 aa		6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904	KLK5	Q9Y337	293 aa	Predicted RBP	6.63	□□□□□ -1.35
SNHG1-215	ENST00000540904	LCE6A	A0A183	80 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	TAAR5	O14804	337 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	JTB	O76095	146 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	MB	P02144	154 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	SPART-AS1	P0CW21	52 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	ARL14EPL	P0DKL9	152 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	LEP	P41159	167 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	CSN1S1	P47710	185 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	CDC34	P49427	236 aa	Predicted RBP	6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	GFI1B	Q5VTD9	330 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904		Q6ZTC4	211 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	LYPD1	Q8N2G4	141 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	TMEM256	Q8N2U0	113 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	OR11H4	Q8NGC9	324 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	RAB24	Q969Q5	203 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	HYLS1	Q96M11	299 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	ODF3	Q96PU9	254 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	AGPAT4-IT1	Q9H0P7	198 aa		6.62	□□□□□ -1.35
SNHG1-215	ENST00000540904	YTHDF2	Q9Y5A9	579 aa	Known RBP	6.62	□□□□□ -1.35

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