RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 K7EIM0 57 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 K7EM74 188 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 K7EP34 96 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 CRYGBP07316 175 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 PVRIGQ6DKI7 326 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 OR4X2Q8NGF9 303 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 JKAMPQ9P055 326 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 FABP2P12104 132 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 HOXB4P17483 251 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-237ENST00000539504 FAM57AQ8TBR7 257 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 DCHS1Q96JQ0 3298 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 ABCA4P78363 2273 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 BDP1A6H8Y1 2624 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 PPIAL4CA0A0B4J2A2 164 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 IGHV3-35A0A0C4DH35 117 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 A0A0G2JNJ9 132 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 TIMM23O14925 209 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 PPIAL4GP0DN37 164 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 S100A7AQ86SG5 101 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 LYPD1Q8N2G4 141 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 Q9UFV3 132 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 TTC28Q96AY4 2481 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 PIP4P2Q8N4L2 257 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 TTTY13Q9BZ97 58 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 APC2O95996 2303 aa8.86□□□□□ -0.99
SYNE1-237ENST00000539504 TRBV6-1A0A0K0K1D8 114 aa8.85□□□□□ -0.99
SYNE1-237ENST00000539504 OVOL3O00110 214 aa8.85□□□□□ -0.99
SYNE1-237ENST00000539504 PAX2Q02962 417 aa8.85□□□□□ -0.99
SYNE1-237ENST00000539504 NDUFS7O75251 213 aa8.85□□□□□ -0.99
SYNE1-237ENST00000539504 EVI2AP22794 236 aa8.85□□□□□ -0.99
SYNE1-237ENST00000539504 ZNF493Q6ZR52 646 aa8.85□□□□□ -0.99
SYNE1-237ENST00000539504 TNFRSF14Q92956 283 aa8.85□□□□□ -0.99
SYNE1-237ENST00000539504 MAP1LC3AQ9H492 121 aa8.85□□□□□ -0.99
SYNE1-237ENST00000539504 CACNA1BQ00975 2339 aa8.85□□□□□ -0.99
SYNE1-237ENST00000539504 RIF1Q5UIP0 2472 aaKnown RBP8.85□□□□□ -0.99
SYNE1-237ENST00000539504 SMG1Q96Q15 3661 aaKnown RBP8.85□□□□□ -0.99
SYNE1-237ENST00000539504 IGLV1-47P01700 117 aa8.85□□□□□ -0.99
SYNE1-237ENST00000539504 PPIFP30405 207 aaKnown RBP8.85□□□□□ -0.99
SYNE1-237ENST00000539504 Q6ZS92 163 aa8.85□□□□□ -0.99
SYNE1-237ENST00000539504 DPF1Q92782 380 aa8.85□□□□□ -0.99
SYNE1-237ENST00000539504 MGAQ8IWI9 3026 aa8.84□□□□□ -0.99
SYNE1-237ENST00000539504 PIEZO2Q9H5I5 2752 aa8.84□□□□□ -0.99
SYNE1-237ENST00000539504 THBDP07204 575 aa8.84□□□□□ -0.99
SYNE1-237ENST00000539504 SMIM13P0DJ93 91 aa8.84□□□□□ -0.99
SYNE1-237ENST00000539504 LEPP41159 167 aa8.84□□□□□ -0.99
SYNE1-237ENST00000539504 MED13LQ71F56 2210 aa8.84□□□□□ -0.99
SYNE1-237ENST00000539504 EGR2P11161 476 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-237ENST00000539504 UFSP1Q6NVU6 142 aa8.84□□□□□ -0.99
SYNE1-237ENST00000539504 MSRB1Q9NZV6 116 aa8.84□□□□□ -0.99
SYNE1-237ENST00000539504 KAAG1Q9UBP8 84 aa8.84□□□□□ -0.99
SYNE1-237ENST00000539504 A0A1W2PPM0 123 aa8.84□□□□□ -1
SYNE1-237ENST00000539504 MFAP4P55083 255 aa8.84□□□□□ -1
SYNE1-237ENST00000539504 SAMD5Q5TGI4 173 aa8.84□□□□□ -1
SYNE1-237ENST00000539504 SPTA1P02549 2419 aa8.83□□□□□ -1
SYNE1-237ENST00000539504 TNFRSF13BO14836 293 aaPredicted RBP8.83□□□□□ -1
SYNE1-237ENST00000539504 GFRALQ6UXV0 394 aa8.83□□□□□ -1
SYNE1-237ENST00000539504 NCBP2LA6PVI3 153 aaKnown RBP8.83□□□□□ -1
SYNE1-237ENST00000539504 BMI1P35226 326 aa8.83□□□□□ -1
SYNE1-237ENST00000539504 GATD1Q8NB37 220 aa8.83□□□□□ -1
SYNE1-237ENST00000539504 PRR25Q96S07 402 aa8.83□□□□□ -1
SYNE1-237ENST00000539504 E7EQL1 145 aa8.83□□□□□ -1
SYNE1-237ENST00000539504 CEACAM4O75871 244 aa8.83□□□□□ -1
SYNE1-237ENST00000539504 HLA-DMBP28068 263 aa8.83□□□□□ -1
SYNE1-237ENST00000539504 ADAMTSL5Q6ZMM2 481 aa8.83□□□□□ -1
SYNE1-237ENST00000539504 FOXC2Q99958 501 aa8.83□□□□□ -1
SYNE1-237ENST00000539504 RAB1BQ9H0U4 201 aa8.83□□□□□ -1
SYNE1-237ENST00000539504 TNRC18O15417 2968 aaPredicted RBP8.82□□□□□ -1
SYNE1-237ENST00000539504 TMEM238C9JI98 176 aa8.82□□□□□ -1
SYNE1-237ENST00000539504 FCER1GP30273 86 aa8.82□□□□□ -1
SYNE1-237ENST00000539504 GTSCR1Q86UQ5 136 aa8.82□□□□□ -1
SYNE1-237ENST00000539504 OR5A1Q8NGJ0 315 aa8.82□□□□□ -1
SYNE1-237ENST00000539504 VGLL1Q99990 258 aa8.82□□□□□ -1
SYNE1-237ENST00000539504 G3V4G9 280 aa8.82□□□□□ -1
SYNE1-237ENST00000539504 K7ERJ3 54 aa8.82□□□□□ -1
SYNE1-237ENST00000539504 NBR2O15453 112 aa8.82□□□□□ -1
SYNE1-237ENST00000539504 RPL7P18124 248 aaKnown RBP8.82□□□□□ -1
SYNE1-237ENST00000539504 SPENQ96T58 3664 aaKnown RBP8.82□□□□□ -1
SYNE1-237ENST00000539504 SIVA1O15304 175 aa8.82□□□□□ -1
SYNE1-237ENST00000539504 NHP2Q9NX24 153 aaKnown RBP8.82□□□□□ -1
SYNE1-237ENST00000539504 U3KQK5 164 aa8.82□□□□□ -1
SYNE1-237ENST00000539504 OTOGLQ3ZCN5 2332 aa8.81□□□□□ -1
SYNE1-237ENST00000539504 K7EMI3 77 aa8.81□□□□□ -1
SYNE1-237ENST00000539504 ZNF80P51504 273 aaPredicted RBP8.81□□□□□ -1
SYNE1-237ENST00000539504 FXYD2P54710 66 aa8.81□□□□□ -1
SYNE1-237ENST00000539504 PDE6HQ13956 83 aa8.81□□□□□ -1
SYNE1-237ENST00000539504 TMEM160Q9NX00 188 aa8.81□□□□□ -1
SYNE1-237ENST00000539504 GAS8-AS1O95177 125 aa8.81□□□□□ -1
SYNE1-237ENST00000539504 GATA1P15976 413 aaPredicted RBP8.81□□□□□ -1
SYNE1-237ENST00000539504 TMEM11P17152 192 aa8.81□□□□□ -1
SYNE1-237ENST00000539504 IGFL3Q6UXB1 125 aa8.81□□□□□ -1
SYNE1-237ENST00000539504 C21orf62Q9NYP8 219 aa8.81□□□□□ -1
SYNE1-237ENST00000539504 ADGRG4Q8IZF6 3080 aa8.81□□□□□ -1
SYNE1-237ENST00000539504 IGKV2D-26A0A0A0MRZ7 120 aa8.81□□□□□ -1
SYNE1-237ENST00000539504 ABHD17AQ96GS6 310 aa8.81□□□□□ -1
SYNE1-237ENST00000539504 NPFFR1Q9GZQ6 430 aa8.81□□□□□ -1
SYNE1-237ENST00000539504 MRPS12O15235 138 aaKnown RBP8.8□□□□□ -1
SYNE1-237ENST00000539504 CHAC1Q9BUX1 264 aa8.8□□□□□ -1
SYNE1-237ENST00000539504 DMXL2Q8TDJ6 3036 aa8.8□□□□□ -1
SYNE1-237ENST00000539504 NBASA2RRP1 2371 aa8.8□□□□□ -1
SYNE1-237ENST00000539504 WI2-2373I1.2A0A1W2PRP0 233 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms