RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 NEU1Q99519 415 aa14.35□□□□□ -0.11
CPSF1-209ENST00000532725 STARD9Q9P2P6 4700 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 M0R2Z0 102 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 M0R3E3 92 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 OR7C2O60412 319 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 EIF3GO75821 320 aaKnown RBP eCLIP14.34□□□□□ -0.11
CPSF1-209ENST00000532725 AMBPP02760 352 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 TAS2R45P59539 299 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 SERF2P84101 59 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 SPINK13Q1W4C9 94 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 EXOC3-AS1Q8N2X6 119 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 OR10G4Q8NGN3 311 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 OR10G9Q8NGN4 311 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 OR10G7Q8NGN6 311 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 IGF2BP2-AS1Q96M15 143 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 CYTL1Q9NRR1 136 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 PRELID1Q9Y255 219 aa14.34□□□□□ -0.11
CPSF1-209ENST00000532725 KMT2CQ8NEZ4 4911 aaKnown RBP14.33□□□□□ -0.11
CPSF1-209ENST00000532725 BORCS7-ASMTA0A0B4J1R7 106 aa14.33□□□□□ -0.12
CPSF1-209ENST00000532725 A0A1W2PPV4 95 aa14.33□□□□□ -0.12
CPSF1-209ENST00000532725 TAAR5O14804 337 aa14.33□□□□□ -0.12
CPSF1-209ENST00000532725 KHDC3LQ587J8 217 aa14.33□□□□□ -0.12
CPSF1-209ENST00000532725 RPP25LQ8N5L8 163 aaKnown RBP14.33□□□□□ -0.12
CPSF1-209ENST00000532725 OR10J6PQ8NGY7 276 aa14.33□□□□□ -0.12
CPSF1-209ENST00000532725 SH3BGRL3Q9H299 93 aa14.33□□□□□ -0.12
CPSF1-209ENST00000532725 TENM2Q9NT68 2774 aa14.33□□□□□ -0.12
CPSF1-209ENST00000532725 SMIM9A6NGZ8 99 aa14.32□□□□□ -0.12
CPSF1-209ENST00000532725 HMSDA8MTL9 139 aa14.32□□□□□ -0.12
CPSF1-209ENST00000532725 BOLA2-SMG1P6H3BVE0 249 aa14.32□□□□□ -0.12
CPSF1-209ENST00000532725 ICAM4Q14773 271 aa14.32□□□□□ -0.12
CPSF1-209ENST00000532725 FAM122CQ6P4D5 195 aa14.32□□□□□ -0.12
CPSF1-209ENST00000532725 GNPNAT1Q96EK6 184 aaPredicted RBP14.32□□□□□ -0.12
CPSF1-209ENST00000532725 PPP1R14DQ9NXH3 145 aa14.32□□□□□ -0.12
CPSF1-209ENST00000532725 GOLT1BQ9Y3E0 138 aa14.32□□□□□ -0.12
CPSF1-209ENST00000532725 IGHV3OR16-12A0A075B7B8 117 aa14.31□□□□□ -0.12
CPSF1-209ENST00000532725 JTBO76095 146 aa14.31□□□□□ -0.12
CPSF1-209ENST00000532725 MBP02144 154 aa14.31□□□□□ -0.12
CPSF1-209ENST00000532725 C11orf45Q8TAV5 145 aa14.31□□□□□ -0.12
CPSF1-209ENST00000532725 PHYHIPLQ96FC7 376 aa14.31□□□□□ -0.12
CPSF1-209ENST00000532725 AAMDCQ9H7C9 122 aa14.31□□□□□ -0.12
CPSF1-209ENST00000532725 TRAV12-2A0A075B6T6 113 aa14.3□□□□□ -0.12
CPSF1-209ENST00000532725 NPIPB6E9PJ23 425 aa14.3□□□□□ -0.12
CPSF1-209ENST00000532725 CT45A10P0DMU9 189 aa14.3□□□□□ -0.12
CPSF1-209ENST00000532725 RANP62826 216 aaKnown RBP14.3□□□□□ -0.12
CPSF1-209ENST00000532725 UBE2L3P68036 154 aaKnown RBP14.3□□□□□ -0.12
CPSF1-209ENST00000532725 PQLC2Q6ZP29 291 aa14.3□□□□□ -0.12
CPSF1-209ENST00000532725 LYPD1Q8N2G4 141 aa14.3□□□□□ -0.12
CPSF1-209ENST00000532725 KCNRGQ8N5I3 272 aa14.3□□□□□ -0.12
CPSF1-209ENST00000532725 ST6GAL2Q96JF0 529 aa14.3□□□□□ -0.12
CPSF1-209ENST00000532725 HMGB3O15347 200 aaKnown RBP14.29□□□□□ -0.12
CPSF1-209ENST00000532725 CDKN1BP46527 198 aa14.29□□□□□ -0.12
CPSF1-209ENST00000532725 NANOS2P60321 138 aaKnown RBP14.29□□□□□ -0.12
CPSF1-209ENST00000532725 ZNF345Q14585 488 aa14.29□□□□□ -0.12
CPSF1-209ENST00000532725 BAP18Q8IXM2 172 aa14.29□□□□□ -0.12
CPSF1-209ENST00000532725 INSP01308 110 aa14.28□□□□□ -0.12
CPSF1-209ENST00000532725 STAG3L2P0CL84 134 aa14.28□□□□□ -0.12
CPSF1-209ENST00000532725 STAG3L3P0CL85 134 aa14.28□□□□□ -0.12
CPSF1-209ENST00000532725 CDC34P49427 236 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-209ENST00000532725 ERCC8Q13216 396 aa14.28□□□□□ -0.12
CPSF1-209ENST00000532725 PMS2P11Q13670 270 aa14.28□□□□□ -0.12
CPSF1-209ENST00000532725 KIR3DS1Q14943 382 aa14.28□□□□□ -0.12
CPSF1-209ENST00000532725 RAB24Q969Q5 203 aa14.28□□□□□ -0.12
CPSF1-209ENST00000532725 AGPAT4-IT1Q9H0P7 198 aa14.28□□□□□ -0.12
CPSF1-209ENST00000532725 CXorf65A6NEN9 183 aa14.27□□□□□ -0.13
CPSF1-209ENST00000532725 C9orf47Q6ZRZ4 202 aa14.27□□□□□ -0.13
CPSF1-209ENST00000532725 LINC00477Q96M19 166 aa14.27□□□□□ -0.13
CPSF1-209ENST00000532725 ODF3Q96PU9 254 aa14.27□□□□□ -0.13
CPSF1-209ENST00000532725 ARPC5LQ9BPX5 153 aa14.27□□□□□ -0.13
CPSF1-209ENST00000532725 Q9H3A6 140 aa14.27□□□□□ -0.13
CPSF1-209ENST00000532725 A0A0D9SG52 128 aa14.26□□□□□ -0.13
CPSF1-209ENST00000532725 HBE1P02100 147 aa14.26□□□□□ -0.13
CPSF1-209ENST00000532725 PRM2P04554 102 aa14.26□□□□□ -0.13
CPSF1-209ENST00000532725 TSPOP30536 169 aa14.26□□□□□ -0.13
CPSF1-209ENST00000532725 CEMP1Q6PRD7 247 aaPredicted RBP14.26□□□□□ -0.13
CPSF1-209ENST00000532725 TMEM208Q9BTX3 173 aa14.26□□□□□ -0.13
CPSF1-209ENST00000532725 ACTR3CQ9C0K3 210 aaPredicted RBP14.26□□□□□ -0.13
CPSF1-209ENST00000532725 TMEM189A5PLL7 270 aa14.25□□□□□ -0.13
CPSF1-209ENST00000532725 ARL14EPLP0DKL9 152 aa14.25□□□□□ -0.13
CPSF1-209ENST00000532725 RRN3P1Q2M238 152 aa14.25□□□□□ -0.13
CPSF1-209ENST00000532725 SUN5Q8TC36 379 aa14.25□□□□□ -0.13
CPSF1-209ENST00000532725 PHLDA1Q8WV24 401 aaPredicted RBP14.25□□□□□ -0.13
CPSF1-209ENST00000532725 FAM19A4Q96LR4 140 aa14.25□□□□□ -0.13
CPSF1-209ENST00000532725 VGLL1Q99990 258 aa14.25□□□□□ -0.13
CPSF1-209ENST00000532725 CELA1Q9UNI1 258 aa14.25□□□□□ -0.13
CPSF1-209ENST00000532725 IGKV2-40A0A087WW87 121 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-209ENST00000532725 ZNF705GA8MUZ8 300 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-209ENST00000532725 IGKV2D-40P01614 121 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-209ENST00000532725 SSX7Q7RTT5 188 aa14.24□□□□□ -0.13
CPSF1-209ENST00000532725 TCTE3Q8IZS6 198 aa14.24□□□□□ -0.13
CPSF1-209ENST00000532725 TMEM256Q8N2U0 113 aa14.24□□□□□ -0.13
CPSF1-209ENST00000532725 LINC01587Q99440 93 aa14.24□□□□□ -0.13
CPSF1-209ENST00000532725 OTORQ9NRC9 128 aa14.24□□□□□ -0.13
CPSF1-209ENST00000532725 DYNC2H1Q8NCM8 4307 aaKnown RBP14.23□□□□□ -0.13
CPSF1-209ENST00000532725 PGPA6NDG6 321 aa14.23□□□□□ -0.13
CPSF1-209ENST00000532725 NUPR2A6NF83 97 aa14.23□□□□□ -0.13
CPSF1-209ENST00000532725 GCHFRP30047 84 aa14.23□□□□□ -0.13
CPSF1-209ENST00000532725 LEPP41159 167 aa14.23□□□□□ -0.13
CPSF1-209ENST00000532725 CSN1S1P47710 185 aa14.23□□□□□ -0.13
CPSF1-209ENST00000532725 ZNF726P1Q15940 193 aa14.23□□□□□ -0.13
CPSF1-209ENST00000532725 GFI1BQ5VTD9 330 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms