RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 BEX4Q9NWD9 120 aaPredicted RBP12.27□□□□□ -0.45
USH1C-204ENST00000526313 EPG5Q9HCE0 2579 aa12.27□□□□□ -0.45
USH1C-204ENST00000526313 SERF1AO75920 110 aa12.26□□□□□ -0.45
USH1C-204ENST00000526313 IGLV1-40P01703 118 aa12.26□□□□□ -0.45
USH1C-204ENST00000526313 CFHR3Q02985 330 aa12.26□□□□□ -0.45
USH1C-204ENST00000526313 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.26□□□□□ -0.45
USH1C-204ENST00000526313 Q6ZS46 218 aa12.26□□□□□ -0.45
USH1C-204ENST00000526313 LRRC75A-AS1Q8N1F1 130 aa12.26□□□□□ -0.45
USH1C-204ENST00000526313 METTL26Q96S19 204 aa12.26□□□□□ -0.45
USH1C-204ENST00000526313 MAP1AP78559 2803 aaPredicted RBP12.26□□□□□ -0.45
USH1C-204ENST00000526313 A8MWP6 167 aa12.26□□□□□ -0.45
USH1C-204ENST00000526313 F2Z2F3 143 aa12.26□□□□□ -0.45
USH1C-204ENST00000526313 APOHP02749 345 aaPredicted RBP12.26□□□□□ -0.45
USH1C-204ENST00000526313 OR2D3Q8NGH3 330 aa12.26□□□□□ -0.45
USH1C-204ENST00000526313 ANKRD17O75179 2603 aaKnown RBP12.25□□□□□ -0.45
USH1C-204ENST00000526313 FSHBP01225 129 aa12.25□□□□□ -0.45
USH1C-204ENST00000526313 HBBP68871 147 aa12.25□□□□□ -0.45
USH1C-204ENST00000526313 SAPCD1Q5SSQ6 148 aa12.25□□□□□ -0.45
USH1C-204ENST00000526313 BAGE3Q86Y29 109 aa12.25□□□□□ -0.45
USH1C-204ENST00000526313 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.25□□□□□ -0.45
USH1C-204ENST00000526313 SRIP30626 198 aa12.25□□□□□ -0.45
USH1C-204ENST00000526313 TPPP2P59282 170 aa12.25□□□□□ -0.45
USH1C-204ENST00000526313 LCN12Q6JVE5 192 aa12.25□□□□□ -0.45
USH1C-204ENST00000526313 LURAP1LQ8IV03 231 aa12.25□□□□□ -0.45
USH1C-204ENST00000526313 C8orf49Q96NF6 230 aa12.25□□□□□ -0.45
USH1C-204ENST00000526313 PRR25Q96S07 402 aa12.25□□□□□ -0.45
USH1C-204ENST00000526313 ASCL2Q99929 193 aa12.25□□□□□ -0.45
USH1C-204ENST00000526313 IGKV2-40A0A087WW87 121 aaPredicted RBP12.24□□□□□ -0.45
USH1C-204ENST00000526313 IGKV2D-40P01614 121 aaPredicted RBP12.24□□□□□ -0.45
USH1C-204ENST00000526313 HLA-DMBP28068 263 aa12.24□□□□□ -0.45
USH1C-204ENST00000526313 DEFB112Q30KQ8 113 aa12.24□□□□□ -0.45
USH1C-204ENST00000526313 PGLYRP4Q96LB8 373 aa12.24□□□□□ -0.45
USH1C-204ENST00000526313 SLC50A1Q9BRV3 221 aa12.24□□□□□ -0.45
USH1C-204ENST00000526313 ZMAT5Q9UDW3 170 aaKnown RBP12.24□□□□□ -0.45
USH1C-204ENST00000526313 HAX1O00165 279 aa12.23□□□□□ -0.45
USH1C-204ENST00000526313 TGFAP01135 160 aa12.23□□□□□ -0.45
USH1C-204ENST00000526313 PRB4P10163 310 aaPredicted RBP12.23□□□□□ -0.45
USH1C-204ENST00000526313 ARL3P36405 182 aa12.23□□□□□ -0.45
USH1C-204ENST00000526313 KLF5Q13887 457 aaPredicted RBP12.23□□□□□ -0.45
USH1C-204ENST00000526313 DEFB113Q30KQ7 82 aa12.23□□□□□ -0.45
USH1C-204ENST00000526313 KLK15Q9H2R5 256 aa12.23□□□□□ -0.45
USH1C-204ENST00000526313 USP9YO00507 2555 aaPredicted RBP12.23□□□□□ -0.45
USH1C-204ENST00000526313 RBAKDNA6NC62 111 aa12.23□□□□□ -0.45
USH1C-204ENST00000526313 NDUFA4O00483 81 aa12.23□□□□□ -0.45
USH1C-204ENST00000526313 CAMPP49913 170 aa12.23□□□□□ -0.45
USH1C-204ENST00000526313 IGFL4Q6B9Z1 124 aa12.23□□□□□ -0.45
USH1C-204ENST00000526313 VGLL1Q99990 258 aa12.23□□□□□ -0.45
USH1C-204ENST00000526313 ZNF705FA8MVS1 300 aaPredicted RBP12.22□□□□□ -0.45
USH1C-204ENST00000526313 RNF223E7ERA6 249 aa12.22□□□□□ -0.45
USH1C-204ENST00000526313 TRBV12-3P01733 135 aa12.22□□□□□ -0.45
USH1C-204ENST00000526313 IGHV4-31P0DP07 118 aa12.22□□□□□ -0.45
USH1C-204ENST00000526313 C9orf139Q6ZV77 190 aa12.22□□□□□ -0.45
USH1C-204ENST00000526313 GATD1Q8NB37 220 aa12.22□□□□□ -0.45
USH1C-204ENST00000526313 C18orf32Q8TCD1 76 aa12.22□□□□□ -0.45
USH1C-204ENST00000526313 ALKBH7Q9BT30 221 aaPredicted RBP12.22□□□□□ -0.45
USH1C-204ENST00000526313 CSPG4Q6UVK1 2322 aa12.22□□□□□ -0.45
USH1C-204ENST00000526313 CSMD2Q7Z408 3487 aa12.22□□□□□ -0.45
USH1C-204ENST00000526313 TRAV8-2A0A0B4J237 113 aa12.22□□□□□ -0.45
USH1C-204ENST00000526313 CT45A10P0DMU9 189 aa12.22□□□□□ -0.45
USH1C-204ENST00000526313 MRPL53Q96EL3 112 aaKnown RBP12.22□□□□□ -0.45
USH1C-204ENST00000526313 PTPN13Q12923 2485 aa12.22□□□□□ -0.45
USH1C-204ENST00000526313 IGHV3-66A0A0C4DH42 116 aa12.21□□□□□ -0.45
USH1C-204ENST00000526313 IGHV4-59P01825 116 aa12.21□□□□□ -0.45
USH1C-204ENST00000526313 MAPK1IP1LQ8NDC0 245 aa12.21□□□□□ -0.45
USH1C-204ENST00000526313 GLMPQ8WWB7 406 aa12.21□□□□□ -0.45
USH1C-204ENST00000526313 SSBP4Q9BWG4 385 aaPredicted RBP12.21□□□□□ -0.45
USH1C-204ENST00000526313 A0A0G2JLM5 398 aa12.2□□□□□ -0.46
USH1C-204ENST00000526313 ZNF207O43670 478 aaKnown RBP12.2□□□□□ -0.46
USH1C-204ENST00000526313 GPX1P07203 203 aa12.2□□□□□ -0.46
USH1C-204ENST00000526313 FAM162BQ5T6X4 162 aa12.2□□□□□ -0.46
USH1C-204ENST00000526313 Q6AWC8 147 aa12.2□□□□□ -0.46
USH1C-204ENST00000526313 RCHY1Q96PM5 261 aa12.2□□□□□ -0.46
USH1C-204ENST00000526313 CR1P17927 2039 aa12.2□□□□□ -0.46
USH1C-204ENST00000526313 POLQO75417 2590 aa12.2□□□□□ -0.46
USH1C-204ENST00000526313 IGHV3OR16-13A0A075B7E8 117 aa12.2□□□□□ -0.46
USH1C-204ENST00000526313 IGHV3-74A0A0B4J1X5 117 aa12.2□□□□□ -0.46
USH1C-204ENST00000526313 A0A1W2PS18 150 aa12.2□□□□□ -0.46
USH1C-204ENST00000526313 PRAC2D3DTV9 90 aa12.2□□□□□ -0.46
USH1C-204ENST00000526313 SH2D1AO60880 128 aa12.2□□□□□ -0.46
USH1C-204ENST00000526313 UNQ9165/PRO28630Q6UXU0 137 aa12.2□□□□□ -0.46
USH1C-204ENST00000526313 Q6ZWC4 215 aa12.2□□□□□ -0.46
USH1C-204ENST00000526313 A0A1B0GUT8 65 aa12.19□□□□□ -0.46
USH1C-204ENST00000526313 PF4V1P10720 104 aa12.19□□□□□ -0.46
USH1C-204ENST00000526313 SRSF2Q01130 221 aaKnown RBP12.19□□□□□ -0.46
USH1C-204ENST00000526313 C8orf86Q6ZUL3 223 aa12.19□□□□□ -0.46
USH1C-204ENST00000526313 KCNS1Q96KK3 526 aa12.19□□□□□ -0.46
USH1C-204ENST00000526313 PSMG3-AS1Q96PY0 264 aa12.19□□□□□ -0.46
USH1C-204ENST00000526313 CLEC5AQ9NY25 188 aa12.19□□□□□ -0.46
USH1C-204ENST00000526313 IGHV3-49A0A0A0MS15 119 aa12.19□□□□□ -0.46
USH1C-204ENST00000526313 DEFA6Q01524 100 aa12.19□□□□□ -0.46
USH1C-204ENST00000526313 IQCJQ1A5X6 159 aa12.19□□□□□ -0.46
USH1C-204ENST00000526313 OR4X2Q8NGF9 303 aa12.19□□□□□ -0.46
USH1C-204ENST00000526313 CENPEQ02224 2701 aa12.18□□□□□ -0.46
USH1C-204ENST00000526313 A0A1B0GW15 77 aa12.18□□□□□ -0.46
USH1C-204ENST00000526313 TMEM89A2RUT3 159 aa12.18□□□□□ -0.46
USH1C-204ENST00000526313 ZNF80P51504 273 aaPredicted RBP12.18□□□□□ -0.46
USH1C-204ENST00000526313 Q5PR19 223 aa12.18□□□□□ -0.46
USH1C-204ENST00000526313 PRSS57Q6UWY2 283 aa12.18□□□□□ -0.46
USH1C-204ENST00000526313 ZNF575Q86XF7 245 aa12.18□□□□□ -0.46
USH1C-204ENST00000526313 KRTAP1-3Q8IUG1 177 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms