RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 A0A1B0GUL6 1792 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 ADAMTS13Q76LX8 1427 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 TARBP1Q13395 1621 aaKnown RBP1.6□□□□□ -2.15
CD44-216ENST00000525293 RAPGEF6Q8TEU7 1601 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 IGHV3OR16-13A0A075B7E8 117 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 IGKV6-21A0A0C4DH24 114 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 TRBV7-7A0A0K0K1E9 115 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 IRGMA1A4Y4 181 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 NDUFB3O43676 98 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 TIMM17BO60830 172 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 ZNF324O75467 553 aaPredicted RBP1.6□□□□□ -2.15
CD44-216ENST00000525293 IGLV3-27P01718 113 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 IGHV3-7P01780 117 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 HLA-DQA1P01909 254 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 HBDP02042 147 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 IL3RAP26951 378 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 CA7P43166 264 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 CSN1S1P47710 185 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 DYNLT3P51808 116 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 NPC2P61916 151 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 CXCL6P80162 114 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 ADIGQ0VDE8 80 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 CIRBPQ14011 172 aaKnown RBP1.6□□□□□ -2.15
CD44-216ENST00000525293 PMCHL1Q16048 86 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 FBXL19-AS1Q494R0 122 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 C1orf100Q5SVJ3 147 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 C9orf129Q5T035 196 aaKnown RBP1.6□□□□□ -2.15
CD44-216ENST00000525293 CEMP1Q6PRD7 247 aaPredicted RBP1.6□□□□□ -2.15
CD44-216ENST00000525293 CXCL17Q6UXB2 119 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 PHF5AQ7RTV0 110 aaKnown RBP1.6□□□□□ -2.15
CD44-216ENST00000525293 TMEM61Q8N0U2 210 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 CEND1Q8N111 149 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 Q8N8P6 123 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 CYB561D1Q8N8Q1 229 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 MORN4Q8NDC4 146 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 GEMIN6Q8WXD5 167 aaKnown RBP1.6□□□□□ -2.15
CD44-216ENST00000525293 ODF3Q96PU9 254 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 MANBALQ9NQG1 85 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 CYTL1Q9NRR1 136 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 SIPA1L1O43166 1804 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 KIF13AQ9H1H9 1805 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 TET3O43151 1660 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 BRCA1P38398 1863 aaKnown RBP1.6□□□□□ -2.15
CD44-216ENST00000525293 NUP210Q8TEM1 1887 aaPredicted RBP1.6□□□□□ -2.15
CD44-216ENST00000525293 ADGRB3O60242 1522 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 TRPM3Q9HCF6 1732 aaPredicted RBP1.6□□□□□ -2.15
CD44-216ENST00000525293 RLFQ13129 1914 aa1.6□□□□□ -2.15
CD44-216ENST00000525293 PLXNC1O60486 1568 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 MYH9P35579 1960 aaKnown RBP1.59□□□□□ -2.15
CD44-216ENST00000525293 PHF3Q92576 2039 aaKnown RBP1.59□□□□□ -2.15
CD44-216ENST00000525293 CHD2O14647 1828 aaKnown RBP1.59□□□□□ -2.15
CD44-216ENST00000525293 TRPM1Q7Z4N2 1603 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 CCDC88AQ3V6T2 1871 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 TMEM131Q92545 1883 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 IGKV1-12A0A0C4DH73 117 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 A0A1W2PQD3 144 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 PINLYPA6NC86 204 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 ZFP92A6NM28 416 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 NDUFB2O95178 105 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 IGKV1D-12P01611 117 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 IGKV1-16P04430 117 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 HLA-DPB1P04440 258 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 IL5P05113 134 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 P0C879 139 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 C3orf79P0CE67 100 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 SLC25A16P16260 332 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 ELK1P19419 428 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 RNASE4P34096 147 aaKnown RBP1.59□□□□□ -2.15
CD44-216ENST00000525293 TAS2R19P59542 299 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 RPL30P62888 115 aaKnown RBP1.59□□□□□ -2.15
CD44-216ENST00000525293 RBM3P98179 157 aaKnown RBP1.59□□□□□ -2.15
CD44-216ENST00000525293 BSPH1Q075Z2 132 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 ZNF345Q14585 488 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 CDK5R1Q15078 307 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 LINC01554Q52M75 96 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 S100A7L2Q5SY68 101 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 LINC01545Q5VT33 79 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 RPL7L1Q6DKI1 246 aaKnown RBP1.59□□□□□ -2.15
CD44-216ENST00000525293 ZNF322Q6U7Q0 402 aaPredicted RBP1.59□□□□□ -2.15
CD44-216ENST00000525293 C2orf91Q6ZV80 131 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 MDP1Q86V88 176 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 C17orf82Q86X59 251 aaPredicted RBP1.59□□□□□ -2.15
CD44-216ENST00000525293 ITLN2Q8WWU7 325 aaPredicted RBP1.59□□□□□ -2.15
CD44-216ENST00000525293 TVP23CQ96ET8 276 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 CHAC1Q9BUX1 264 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 CXCL16Q9H2A7 254 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 ZNF286AQ9HBT8 521 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 HILPDAQ9Y5L2 63 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 MYH7BA7E2Y1 1941 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 MYH1P12882 1939 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 ALPK3Q96L96 1907 aa1.59□□□□□ -2.15
CD44-216ENST00000525293 EFCAB5A4FU69 1503 aa1.59□□□□□ -2.16
CD44-216ENST00000525293 URB2Q14146 1524 aaKnown RBP1.59□□□□□ -2.16
CD44-216ENST00000525293 SYCP2Q9BX26 1530 aa1.59□□□□□ -2.16
CD44-216ENST00000525293 ABCA8O94911 1581 aa1.59□□□□□ -2.16
CD44-216ENST00000525293 ABCA6Q8N139 1617 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 RNF17Q9BXT8 1623 aaKnown RBP1.58□□□□□ -2.16
CD44-216ENST00000525293 EDC4Q6P2E9 1401 aaKnown RBP1.58□□□□□ -2.16
CD44-216ENST00000525293 SPHKAPQ2M3C7 1700 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 MON2Q7Z3U7 1717 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms